RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PTPN6P29350 595 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 PDHA2P29803 388 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 CD6P30203 668 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 VLDLRP98155 873 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 SFSWAPQ12872 951 aaKnown RBP15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 NAE1Q13564 534 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 GRIN2CQ14957 1233 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 PRSS36Q5K4E3 855 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 NOXRED1Q6NXP6 359 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 LRRC70Q7Z2Q7 622 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 PLD3Q8IV08 490 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 SYTL1Q8IYJ3 562 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 REM2Q8IYK8 340 aaPredicted RBP15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 IRF7Q92985 503 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 CCDC115Q96NT0 180 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF347Q96SE7 839 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 YIPF2Q9BWQ6 316 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 SIRT5Q9NXA8 310 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 TMEM9Q9P0T7 183 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 PCDHGA10Q9Y5H3 936 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 YY2O15391 372 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 NUAK1O60285 661 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 ETHE1O95571 254 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 AMD1P17707 334 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF691Q5VV52 312 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 FAM83FQ8NEG4 500 aaPredicted RBP15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 GPR156Q8NFN8 814 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 DACH2Q96NX9 599 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 TUBA1CQ9BQE3 449 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 GPN2Q9H9Y4 310 aaPredicted RBP15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 HMG20AQ9NP66 347 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 TMEM45AQ9NWC5 275 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 BTBD3Q9Y2F9 522 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 PPIL1Q9Y3C6 166 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 SAMHD1Q9Y3Z3 626 aaKnown RBP15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 PLK4O00444 970 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 KPNA4O00629 521 aaPredicted RBP15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 UGT2B11O75310 529 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 MOSPD3O75425 235 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 GBAP04062 536 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 C8GP07360 202 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 GSTT2P0CG29 244 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 GSTT2BP0CG30 244 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 CYP2A7P20853 494 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 CRISP3P54108 245 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 GBX1Q14549 363 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF846Q147U1 533 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 ARHGEF6Q15052 776 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 SPATC1Q76KD6 591 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 P2RY8Q86VZ1 359 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 SYT12Q8IV01 421 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 TERB1Q8NA31 727 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 REXO5Q96IC2 774 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 TOX2Q96NM4 488 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 CPEB1Q9BZB8 566 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 ZDHHC4Q9NPG8 344 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 SPHK2Q9NRA0 654 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 TDP1Q9NUW8 608 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 DCAF13Q9NV06 445 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 MYO1DO94832 1006 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 DLGAP3O95886 979 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 ADH1AP07327 375 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 CD36P16671 472 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 CLK1P49759 484 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 CLCA4Q14CN2 919 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 TMEM53Q6P2H8 277 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 HORMAD1Q86X24 394 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 TMEM132CQ8N3T6 1108 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 SAMD11Q96NU1 681 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 PANX1Q96RD7 426 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 KCNH6Q9H252 994 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 RERGLQ9H628 205 aa15.96■□□□□ 0.15
CCDC88B-210ENST00000494566 GFYI3L273 518 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 C7P10643 843 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 ACPPP15309 386 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 NR4A2P43354 598 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 OR1E2P47887 323 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 IDH2P48735 452 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 GZMMP51124 257 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 CREMQ03060 361 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 UGT8Q16880 541 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 TCEAL5Q5H9L2 206 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 ZNF362Q5T0B9 420 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 GPR149Q86SP6 731 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 METTL3Q86U44 580 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 TTC29Q8NA56 475 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 PIK3C3Q8NEB9 887 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 PAWRQ96IZ0 340 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 MAGED4Q96JG8 741 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 ZNF641Q96N77 438 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 ZNF232Q9UNY5 417 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 ERVW-1Q9UQF0 538 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 SPTBN5Q9NRC6 3674 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 PTPRSQ13332 1948 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 ANTXRLA6NF34 631 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 LINC00271P0C7V0 271 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 TIMP2P16035 220 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 MAGEA8P43361 318 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 DOC2AQ14183 400 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 SYTL3Q4VX76 610 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms