RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 TTC28Q96AY4 2481 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 SH3D21A4FU49 640 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 PSMD11O00231 422 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 DLL1O00548 723 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 SCAMP2O15127 329 aaKnown RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 SGTAO43765 313 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 FAM20BO75063 409 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 SLCO2B1O94956 709 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 ACVR2AP27037 513 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 HTR1BP28222 390 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 HALP42357 657 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 YAP1P46937 504 aaKnown RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 SPINT3P49223 89 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 RELAQ04206 551 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 EMX1Q04741 257 aaPredicted RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 CAMK2GQ13555 558 aaPredicted RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 GTF2H3Q13889 308 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 CLCA4Q14CN2 919 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 MAD2L1BPQ15013 274 aaPredicted RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 NPTX1Q15818 432 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 HKDC1Q2TB90 917 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 PGS1Q32NB8 556 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 PTCHD3Q3KNS1 767 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 TCEAL5Q5H9L2 206 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 LRRC66Q68CR7 880 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 TRIM40Q6P9F5 258 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 CRTC1Q6UUV9 634 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 DNAJC14Q6Y2X3 702 aaPredicted RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 SLC16A12Q6ZSM3 486 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 USP43Q70EL4 1123 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 IKBIPQ70UQ0 350 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 NLRP8Q86W28 1048 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 NPAS3Q8IXF0 933 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 ZZZ3Q8IYH5 903 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 OXR1Q8N573 874 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 SLC15A4Q8N697 577 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 KRTCAP2Q8N6L1 136 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 KIAA1958Q8N8K9 716 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 ZNF540Q8NDQ6 660 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 GOT1L1Q8NHS2 421 aaPredicted RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 LKAAEAR1Q8TD35 194 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 EID2BQ96D98 161 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 YIPF6Q96EC8 236 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 DACH2Q96NX9 599 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 VPS35Q96QK1 796 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 ZNF300Q96RE9 604 aaPredicted RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 CDCA3Q99618 268 aaPredicted RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 CLSTN3Q9BQT9 956 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 DOHHQ9BU89 302 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 EFCAB11Q9BUY7 163 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 DUSP26Q9BV47 211 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 BOCQ9BWV1 1114 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 DGCR6LQ9BY27 220 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 TM6SF2Q9BZW4 377 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 REXO4Q9GZR2 422 aaKnown RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 UBE2ZQ9H832 354 aaPredicted RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 BRD9Q9H8M2 597 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 ZNF556Q9HAH1 456 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 SIAEQ9HAT2 523 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 PRDM6Q9NQX0 595 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 THSD1Q9NS62 852 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 GKN1Q9NS71 199 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 CCDC59Q9P031 241 aaKnown RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 SCHIP1Q9P0W5 487 aaPredicted RBP11.11□□□□□ -0.63
RFC4-214ENST00000494047 ACTL7AQ9Y615 435 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 CPQQ9Y646 472 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 UNC80Q8N2C7 3258 aa11.11□□□□□ -0.63
RFC4-214ENST00000494047 PLXNB3Q9ULL4 1909 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 TSPAN11A1L157 253 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 SCAMP3O14828 347 aaKnown RBP11.1□□□□□ -0.63
RFC4-214ENST00000494047 PSIP1O75475 530 aaKnown RBP11.1□□□□□ -0.63
RFC4-214ENST00000494047 KRT75O95678 551 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 HTR1AP08908 422 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 ENGP17813 658 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 SERPINB1P30740 379 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 POLR2IP36954 125 aaKnown RBP11.1□□□□□ -0.63
RFC4-214ENST00000494047 NNMTP40261 264 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 GP2P55259 537 aaKnown RBP11.1□□□□□ -0.63
RFC4-214ENST00000494047 YBX1P67809 324 aaKnown RBP11.1□□□□□ -0.63
RFC4-214ENST00000494047 ZNF45Q02386 682 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 NPRL3Q12980 569 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 CHIT1Q13231 466 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 RAPSNQ13702 412 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 CAMK1Q14012 370 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 NKG7Q16617 165 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 HIST2H2ACQ16777 129 aaPredicted RBP11.1□□□□□ -0.63
RFC4-214ENST00000494047 ZNF181Q2M3W8 571 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 CTU2Q2VPK5 515 aaKnown RBP11.1□□□□□ -0.63
RFC4-214ENST00000494047 ZNF284Q2VY69 593 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 LEXMQ3ZCV2 418 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 SYTL3Q4VX76 610 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 CARD16Q5EG05 197 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 CPTPQ5TA50 214 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 HIST2H2AA3Q6FI13 130 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 ZCCHC8Q6NZY4 707 aaKnown RBP11.1□□□□□ -0.63
RFC4-214ENST00000494047 XKR5Q6UX68 686 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 B3GNT8Q7Z7M8 397 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 RBM23Q86U06 439 aaKnown RBP11.1□□□□□ -0.63
RFC4-214ENST00000494047 IGFN1Q86VF2 1251 aa11.1□□□□□ -0.63
RFC4-214ENST00000494047 TRIM69Q86WT6 500 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms