RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 POMGNT1Q8WZA1 660 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 NDRG1Q92597 394 aaKnown RBP2.94□□□□□ -1.94
PTCD3-218ENST00000493430 KIFAP3Q92845 792 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 TCEAL3Q969E4 200 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 MYLPFQ96A32 169 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 CCDC127Q96BQ5 260 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 SENP8Q96LD8 212 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 CYP2S1Q96SQ9 504 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 JPH2Q9BR39 696 aaPredicted RBP2.94□□□□□ -1.94
PTCD3-218ENST00000493430 ADPGKQ9BRR6 497 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 NFKBIZQ9BYH8 718 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 C2orf40Q9H1Z8 148 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 MFSD1Q9H3U5 465 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 SMYD3Q9H7B4 428 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 TRPC7Q9HCX4 862 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 CPSF3Q9UKF6 684 aaKnown RBP2.94□□□□□ -1.94
PTCD3-218ENST00000493430 DUSP12Q9UNI6 340 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 RNF215Q9Y6U7 377 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 CABIN1Q9Y6J0 2220 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 DMXL1Q9Y485 3027 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 TNRC6AQ8NDV7 1962 aaKnown RBP2.94□□□□□ -1.94
PTCD3-218ENST00000493430 ANKRD12Q6UB98 2062 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 PIKFYVEQ9Y2I7 2098 aa2.94□□□□□ -1.94
PTCD3-218ENST00000493430 AKAP13Q12802 2813 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 HEPACAM2A8MVW5 462 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 ANHXE9PGG2 379 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PIRO00625 290 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CYB561D2O14569 222 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 OGTO15294 1046 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 POLR2DO15514 142 aaKnown RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CLDN3O15551 220 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PRKNO60260 465 aaPredicted RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 TOM1L1O75674 476 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 BEST1O76090 585 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 FAM106CPP0CH98 169 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PRSS56P0CW18 603 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 DLATP10515 647 aaKnown RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 KCNE1P15382 129 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PFKFB1P16118 471 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 HMGA1P17096 107 aaKnown RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 HOXB8P17481 243 aaPredicted RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 POLR2CP19387 275 aaPredicted RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 AOC1P19801 751 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 ZNF10P21506 573 aaPredicted RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CCNE1P24864 410 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 AXLP30530 894 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 TRAPPC10P48553 1259 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 ZNF131P52739 623 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CDH15P55291 814 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 MYL6P60660 151 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CSNK2A1P68400 391 aaPredicted RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 IRX1P78414 480 aaPredicted RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 RPL24P83731 157 aaKnown RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 YWHAHQ04917 246 aaPredicted RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 KDSRQ06136 332 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 FOXM1Q08050 763 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 STK4Q13043 487 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PNOCQ13519 176 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 NAE1Q13564 534 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PON2Q15165 354 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 RNPS1Q15287 305 aaKnown RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 MLF2Q15773 248 aaPredicted RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 ZBTB6Q15916 424 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 GRAMD1BQ3KR37 738 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 ZNF766Q5HY98 468 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 MDH1BQ5I0G3 518 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 WDR38Q5JTN6 314 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 C1orf220Q5T0J3 134 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 SPATA1Q5VX52 437 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 TXNDC8Q6A555 127 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 ZNF280DQ6N043 979 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 BRAT1Q6PJG6 821 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 DCLRE1AQ6PJP8 1040 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 SLC46A3Q7Z3Q1 461 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 NOTCH2NLQ7Z3S9 236 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PDCL2Q8N4E4 241 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 DEFB119Q8N690 84 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PCDH20Q8N6Y1 951 aaKnown RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 LINC00301Q8NCQ3 95 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CSNK2A3Q8NEV1 391 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 TRIM58Q8NG06 486 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 OR52I2Q8NH67 350 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 WDR20Q8TBZ3 569 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 SCFD1Q8WVM8 642 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 ELP4Q96EB1 424 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CCDC51Q96ER9 411 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 LINGO1Q96FE5 620 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CALML4Q96GE6 196 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CDCA3Q99618 268 aaPredicted RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PKMYT1Q99640 499 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 NAP1L4Q99733 375 aaKnown RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 FAM110AQ9BQ89 295 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 STRA6Q9BX79 667 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 HEMGNQ9BXL5 484 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 UBXN6Q9BZV1 441 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 CCSER1Q9C0I3 900 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 RPF1Q9H9Y2 349 aaKnown RBP2.93□□□□□ -1.94
PTCD3-218ENST00000493430 PARVGQ9HBI0 331 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 HPS4Q9NQG7 708 aa2.93□□□□□ -1.94
PTCD3-218ENST00000493430 C20orf141Q9NUB4 165 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms