RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 MTHFD1P11586 935 aaKnown RBP13.65□□□□□ -0.22
CUX1-209ENST00000487284 AMD1P17707 334 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 ARRB1P49407 418 aaPredicted RBP13.65□□□□□ -0.22
CUX1-209ENST00000487284 FOXM1Q08050 763 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 SLBPQ14493 270 aaKnown RBP eCLIP13.65□□□□□ -0.22
CUX1-209ENST00000487284 SHBQ15464 509 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 RPE65Q16518 533 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 HLA-BQ31612 363 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 TIGD2Q4W5G0 525 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 THEMIS2Q5TEJ8 643 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 PRMT9Q6P2P2 845 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 RNF175Q8N4F7 328 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 MINDY1Q8N5J2 469 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 EFCAB3Q8N7B9 438 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 GLB1L3Q8NCI6 653 aaPredicted RBP13.65□□□□□ -0.22
CUX1-209ENST00000487284 FAM46DQ8NEK8 389 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 VPS33AQ96AX1 596 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 CCDC124Q96CT7 223 aaKnown RBP13.65□□□□□ -0.22
CUX1-209ENST00000487284 APIPQ96GX9 242 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 MTERF1Q99551 399 aaKnown RBP13.65□□□□□ -0.22
CUX1-209ENST00000487284 DCLRE1BQ9H816 532 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 SPAG4Q9NPE6 437 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 GID8Q9NWU2 228 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 VPS29Q9UBQ0 182 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 DLGAP4Q9Y2H0 992 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 HEBP2Q9Y5Z4 205 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 TRBV23OR9-2A0A075B6M9 112 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 TRIM38O00635 465 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 PSMG1O95456 288 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 SDC1P18827 310 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 PKLRP30613 574 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 RXRGP48443 463 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 RAB28P51157 221 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 DDX39BQ13838 428 aaKnown RBP13.64□□□□□ -0.23
CUX1-209ENST00000487284 LAIR1Q6GTX8 287 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 TCEAL6Q6IPX3 200 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 ADNP2Q6IQ32 1131 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 C17orf64Q86WR6 236 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 GKN2Q86XP6 184 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 FAM129CQ86XR2 697 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 NAGSQ8N159 534 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 DPP10Q8N608 796 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 LINC01555Q8NAE3 123 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 SUMF1Q8NBK3 374 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 OR2L8Q8NGY9 312 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 HUS1BQ8NHY5 278 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 TCEAL3Q969E4 200 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 UBE2E3Q969T4 207 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 C11orf24Q96F05 449 aaPredicted RBP13.64□□□□□ -0.23
CUX1-209ENST00000487284 ZBTB18Q99592 522 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 NRTNQ99748 197 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 HOPXQ9BPY8 73 aaPredicted RBP13.64□□□□□ -0.23
CUX1-209ENST00000487284 DPY30Q9C005 99 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 CLMPQ9H6B4 373 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 PELI2Q9HAT8 420 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 IL21RQ9HBE5 538 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 TMEM181Q9P2C4 612 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 ZNF624Q9P2J8 865 aaPredicted RBP13.64□□□□□ -0.23
CUX1-209ENST00000487284 TAC3Q9UHF0 121 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 DOLKQ9UPQ8 538 aa13.64□□□□□ -0.23
CUX1-209ENST00000487284 PRAMEF33A0A0G2JMD5 474 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 A0A1B0GTQ1 180 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 MAGEB17A8MXT2 336 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 B4DGG1 531 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 LMO7DNF2Z398 122 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 FOXE1O00358 373 aaPredicted RBP13.63□□□□□ -0.23
CUX1-209ENST00000487284 ARHGAP33O14559 1287 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 YY2O15391 372 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 NPPAP01160 153 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 PCNAP12004 261 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 CDH1P12830 882 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 ME2P23368 584 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 EPHA8P29322 1005 aaPredicted RBP13.63□□□□□ -0.23
CUX1-209ENST00000487284 SLC19A1P41440 591 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 CLDN8P56748 225 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 CCNIQ14094 377 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 HIST2H2ACQ16777 129 aaPredicted RBP13.63□□□□□ -0.23
CUX1-209ENST00000487284 DEFB133Q30KQ1 61 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 PAGE3Q5JUK9 113 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 PLA2G2CQ5R387 149 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 HIST2H2AA3Q6FI13 130 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 NOXRED1Q6NXP6 359 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 SLC25A45Q8N413 288 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 C2orf73Q8N5S3 287 aaPredicted RBP13.63□□□□□ -0.23
CUX1-209ENST00000487284 ABHD11Q8NFV4 315 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 OR2I1PQ8NGU4 316 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 JADE3Q92613 823 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 STMN2Q93045 179 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 LRRC58Q96CX6 371 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 SLC39A3Q9BRY0 314 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 SPNS1Q9H2V7 528 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 GAREM1Q9H706 876 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 KIR3DX1Q9H7L2 352 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 FAM86C1Q9NVL1 165 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 ABCD2Q9UBJ2 740 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 SUCOQ9UBS9 1254 aaKnown RBP13.63□□□□□ -0.23
CUX1-209ENST00000487284 NKX1-2Q9UD57 310 aaPredicted RBP13.63□□□□□ -0.23
CUX1-209ENST00000487284 GMEB2Q9UKD1 530 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 PACSIN3Q9UKS6 424 aa13.63□□□□□ -0.23
CUX1-209ENST00000487284 PPT2Q9UMR5 302 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms