RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 PTPN4P29074 926 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 SLCO1A2P46721 670 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 GCGRP47871 477 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 CCT5P48643 541 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 RHDQ02161 417 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 PCBP2Q15366 365 aaKnown RBP eCLIP13.97□□□□□ -0.17
LIMS3-205ENST00000487150 TBCCQ15814 346 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 HIST2H2ACQ16777 129 aaPredicted RBP13.97□□□□□ -0.17
LIMS3-205ENST00000487150 PFKFB4Q16877 469 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 ZXDCQ2QGD7 858 aaPredicted RBP13.97□□□□□ -0.17
LIMS3-205ENST00000487150 PRAMEF17Q5VTA0 474 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 HIST2H2AA3Q6FI13 130 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 OR4N4Q8N0Y3 316 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 SLC38A9Q8NBW4 561 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 PTCD3Q96EY7 689 aaKnown RBP13.97□□□□□ -0.17
LIMS3-205ENST00000487150 MAGEB10Q96LZ2 347 aaPredicted RBP13.97□□□□□ -0.17
LIMS3-205ENST00000487150 NT5DC2Q9H857 520 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 CPSF2Q9P2I0 782 aaKnown RBP13.97□□□□□ -0.17
LIMS3-205ENST00000487150 DHCR7Q9UBM7 475 aaKnown RBP13.97□□□□□ -0.17
LIMS3-205ENST00000487150 ZFP69BQ9UJL9 534 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 MID2Q9UJV3 735 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 RUVBL1Q9Y265 456 aaKnown RBP13.97□□□□□ -0.17
LIMS3-205ENST00000487150 EPG5Q9HCE0 2579 aa13.97□□□□□ -0.17
LIMS3-205ENST00000487150 ANKRD11Q6UB99 2663 aaPredicted RBP13.96□□□□□ -0.17
LIMS3-205ENST00000487150 CCDC151A5D8V7 595 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 SMIM23A6NLE4 172 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 MAP2K7O14733 419 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 TERTO14746 1132 aaKnown RBP13.96□□□□□ -0.17
LIMS3-205ENST00000487150 TAPBPO15533 448 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 NDUFS4O43181 175 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 NRP2O60462 931 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 UGDHO60701 494 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 ONECUT2O95948 504 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 ITGB2P05107 769 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 MTHFD2P13995 350 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 BCL6P41182 706 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 GDF5P43026 501 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 SCTRP47872 440 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 AVPR1BP47901 424 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 NAA20P61599 178 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 YBX1P67809 324 aaKnown RBP13.96□□□□□ -0.17
LIMS3-205ENST00000487150 NFKB2Q00653 900 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 IRF8Q02556 426 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 PCDH1Q08174 1060 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 HERC3Q15034 1050 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 COL28A1Q2UY09 1125 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 XKR6Q5GH73 641 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 CATSPEREQ5SY80 951 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 ARHGAP40Q5TG30 622 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 ZNF385CQ66K41 422 aaPredicted RBP13.96□□□□□ -0.17
LIMS3-205ENST00000487150 FAM198BQ6UWH4 519 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 TMIGD1Q6UXZ0 262 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 SLCO4C1Q6ZQN7 724 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 ABHD13Q7L211 337 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 SLC22A9Q8IVM8 553 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 EPS8L3Q8TE67 593 aaKnown RBP13.96□□□□□ -0.17
LIMS3-205ENST00000487150 SLC13A3Q8WWT9 602 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 NACC2Q96BF6 587 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 REPS1Q96D71 796 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 CCDC126Q96EE4 140 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 WDR34Q96EX3 536 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 VPS50Q96JG6 964 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 IP6K3Q96PC2 410 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 IQCGQ9H095 443 aaKnown RBP13.96□□□□□ -0.17
LIMS3-205ENST00000487150 ACTL8Q9H568 366 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 PRORYQ9H606 182 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 WDR54Q9H977 334 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 SENP1Q9P0U3 644 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 COPG2Q9UBF2 871 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 SH2B3Q9UQQ2 575 aa13.96□□□□□ -0.17
LIMS3-205ENST00000487150 FARSAQ9Y285 508 aaKnown RBP13.96□□□□□ -0.17
LIMS3-205ENST00000487150 DMXL2Q8TDJ6 3036 aa13.96□□□□□ -0.18
LIMS3-205ENST00000487150 A0A088AWK7 358 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 H0YIG0 161 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 TK2O00142 265 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 CREG1O75629 220 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 PYGBP11216 843 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 ZNF10P21506 573 aaPredicted RBP13.95□□□□□ -0.18
LIMS3-205ENST00000487150 FBLP22087 321 aaKnown RBP13.95□□□□□ -0.18
LIMS3-205ENST00000487150 STXBP1P61764 594 aaKnown RBP13.95□□□□□ -0.18
LIMS3-205ENST00000487150 PHEXP78562 749 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 CDC20Q12834 499 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 DSG2Q14126 1118 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 SLBPQ14493 270 aaKnown RBP eCLIP13.95□□□□□ -0.18
LIMS3-205ENST00000487150 RBBP5Q15291 538 aaKnown RBP13.95□□□□□ -0.18
LIMS3-205ENST00000487150 CCDC153Q494R4 210 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 C10orf62Q5T681 223 aaPredicted RBP13.95□□□□□ -0.18
LIMS3-205ENST00000487150 C1orf189Q5VU69 101 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 VN1R4Q7Z5H5 301 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 RAB43Q86YS6 212 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 PLD3Q8IV08 490 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 PLD6Q8N2A8 252 aaKnown RBP13.95□□□□□ -0.18
LIMS3-205ENST00000487150 PTGR2Q8N8N7 351 aaPredicted RBP13.95□□□□□ -0.18
LIMS3-205ENST00000487150 NT5CQ8TCD5 201 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 MZB1Q8WU39 189 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 THAP4Q8WY91 577 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 C10orf90Q96M02 699 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 TMEM109Q9BVC6 243 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 SLC26A1Q9H2B4 701 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 CLK4Q9HAZ1 481 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms