RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TTC9Q92623 222 aa15.15■□□□□ 0.02
UPF3A-208ENST00000484246 WBP1Q96G27 269 aa15.15■□□□□ 0.02
UPF3A-208ENST00000484246 SEC16BQ96JE7 1060 aa15.15■□□□□ 0.02
UPF3A-208ENST00000484246 VPS11Q9H270 941 aa15.15■□□□□ 0.02
UPF3A-208ENST00000484246 SLC26A1Q9H2B4 701 aa15.15■□□□□ 0.02
UPF3A-208ENST00000484246 SLC22A11Q9NSA0 550 aa15.15■□□□□ 0.02
UPF3A-208ENST00000484246 RAB21Q9UL25 225 aa15.15■□□□□ 0.02
UPF3A-208ENST00000484246 TMCO1Q9UM00 188 aa15.15■□□□□ 0.02
UPF3A-208ENST00000484246 FARSAQ9Y285 508 aaKnown RBP15.15■□□□□ 0.02
UPF3A-208ENST00000484246 PADI2Q9Y2J8 665 aa15.15■□□□□ 0.02
UPF3A-208ENST00000484246 SUPT3HB4E1H0 165 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 ERVH48-1M5A8F1 160 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 UBXN8O00124 270 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 SUPT3HO75486 399 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 RBP1P09455 135 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 PIM1P11309 404 aaPredicted RBP15.14■□□□□ 0.01
UPF3A-208ENST00000484246 DEKP35659 375 aaKnown RBP15.14■□□□□ 0.01
UPF3A-208ENST00000484246 HSD17B3P37058 310 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 GDF5P43026 501 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 HSPA7P48741 367 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 PWP1Q13610 501 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 NAA30Q147X3 362 aaPredicted RBP15.14■□□□□ 0.01
UPF3A-208ENST00000484246 SETDB1Q15047 1291 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 UGT8Q16880 541 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 C18orf21Q32NC0 220 aaPredicted RBP15.14■□□□□ 0.01
UPF3A-208ENST00000484246 CATSPEREQ5SY80 951 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 C1orf189Q5VU69 101 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 ATG9BQ674R7 924 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 TMEM214Q6NUQ4 689 aaKnown RBP15.14■□□□□ 0.01
UPF3A-208ENST00000484246 COX15Q7KZN9 410 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 ASPGQ86U10 573 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 ENDOVQ8N8Q3 282 aaKnown RBP15.14■□□□□ 0.01
UPF3A-208ENST00000484246 CAMKVQ8NCB2 501 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 UBLCP1Q8WVY7 318 aaPredicted RBP15.14■□□□□ 0.01
UPF3A-208ENST00000484246 TSNARE1Q96NA8 513 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 UBL7Q96S82 380 aaPredicted RBP15.14■□□□□ 0.01
UPF3A-208ENST00000484246 RUFY1Q96T51 708 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 AIF1LQ9BQI0 150 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 CD244Q9BZW8 370 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 NT5DC2Q9H857 520 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 WDR54Q9H977 334 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 STARD5Q9NSY2 213 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 TCFL5Q9UL49 500 aa15.14■□□□□ 0.01
UPF3A-208ENST00000484246 MRPS18BQ9Y676 258 aaKnown RBP15.14■□□□□ 0.01
UPF3A-208ENST00000484246 SNRNP200O75643 2136 aaKnown RBP15.13■□□□□ 0.01
UPF3A-208ENST00000484246 IGLV3-12A0A075B6K2 115 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 K7EPI3 171 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 MAP2K7O14733 419 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 NKX2-8O15522 239 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 PRPF4O43172 522 aaKnown RBP eCLIP15.13■□□□□ 0.013e-7■■■□□ 17.1
UPF3A-208ENST00000484246 KLF7O75840 302 aaPredicted RBP15.13■□□□□ 0.01
UPF3A-208ENST00000484246 SHBGP04278 402 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 EIF2S1P05198 315 aaKnown RBP15.13■□□□□ 0.01
UPF3A-208ENST00000484246 C1GALT1C1LP0DN25 315 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 EPORP19235 508 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 CXCR2P25025 360 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 GLRBP48167 497 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 ALDH18A1P54886 795 aaKnown RBP15.13■□□□□ 0.01
UPF3A-208ENST00000484246 DSG2Q14126 1118 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 TBCCQ15814 346 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 PDK4Q16654 411 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 NDUFA9Q16795 377 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 ERCC6LQ2NKX8 1250 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 HKDC1Q2TB90 917 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 OVCH1Q7RTY7 1134 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 MREGQ8N565 214 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 LSM14AQ8ND56 463 aaKnown RBP15.13■□□□□ 0.01
UPF3A-208ENST00000484246 NT5CQ8TCD5 201 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 ADAMTS17Q8TE56 1095 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 EXT2Q93063 718 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 MRPL57Q9BQC6 102 aaKnown RBP15.13■□□□□ 0.01
UPF3A-208ENST00000484246 SPNS1Q9H2V7 528 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 OCEL1Q9H607 264 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 WDR70Q9NW82 654 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 IFT80Q9P2H3 777 aaPredicted RBP15.13■□□□□ 0.01
UPF3A-208ENST00000484246 XPR1Q9UBH6 696 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 ZFP69BQ9UJL9 534 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 NXT1Q9UKK6 140 aaKnown RBP15.13■□□□□ 0.01
UPF3A-208ENST00000484246 CDC14AQ9UNH5 594 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 ASB1Q9Y576 335 aa15.13■□□□□ 0.01
UPF3A-208ENST00000484246 DSPP15924 2871 aaKnown RBP15.12■□□□□ 0.01
UPF3A-208ENST00000484246 ITPR1Q14643 2758 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 FEZF1A0PJY2 475 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 VSTM2BA6NLU5 285 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 STX16-NPEPL1H3BU86 382 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 STX16O14662 325 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 LCMT2O60294 686 aaKnown RBP15.12■□□□□ 0.01
UPF3A-208ENST00000484246 CNOT3O75175 753 aaKnown RBP15.12■□□□□ 0.01
UPF3A-208ENST00000484246 CDH16O75309 829 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 KATNA1O75449 491 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 SLC35G6P0C7Q6 338 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 ALAS2P22557 587 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 CASP2P42575 452 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 PCBP2Q15366 365 aaKnown RBP eCLIP15.12■□□□□ 0.01
UPF3A-208ENST00000484246 ZNF740Q8NDX6 193 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 TTLQ8NG68 377 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 OR2Y1Q8NGV0 311 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 THAP4Q8WY91 577 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 NACC2Q96BF6 587 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 EFCAB11Q9BUY7 163 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms