RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	BDP1	A6H8Y1	2624 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	TRBC2	A0A5B9	178 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	HNRNPCL1	O60812	293 aa	Known RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SLC22A3	O75751	556 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	TBX6	O95947	436 aa	Predicted RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SERPIND1	P05546	499 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SNRPB2	P08579	225 aa	Known RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	BCKDHA	P12694	445 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	MAG	P20916	626 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	PTX3	P26022	381 aa	Predicted RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	PTPN4	P29074	926 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	EPHA8	P29322	1005 aa	Predicted RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	BCL6	P41182	706 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	LSS	P48449	732 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	MRPL19	P49406	292 aa	Known RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	RASSF2	P50749	326 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	IRX1	P78414	480 aa	Predicted RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ACTN3	Q08043	901 aa	Predicted RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	PTGR1	Q14914	329 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	CCDC6	Q16204	474 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	TRIM61	Q5EBN2	209 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ARMC6	Q6NXE6	501 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	NOXRED1	Q6NXP6	359 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	FBXO42	Q6P3S6	717 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SPESP1	Q6UW49	350 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ASRGL1	Q7L266	308 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	PAQR7	Q86WK9	346 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	C1orf52	Q8N6N3	182 aa	Known RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	OR2I1P	Q8NGU4	316 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	PROKR1	Q8TCW9	393 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	EBPL	Q9BY08	206 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ACTL8	Q9H568	366 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	UCK1	Q9HA47	277 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	CAPN10	Q9HC96	672 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	NMRK1	Q9NWW6	199 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ADGRE2	Q9UHX3	823 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SLC6A14	Q9UN76	642 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	RNF215	Q9Y6U7	377 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	NCOR1	O75376	2440 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	RHPN2P1	A8MT19	583 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	AIM2	O14862	343 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ANKRD28	O15084	1053 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ZW10	O43264	779 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	TNFSF14	O43557	240 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	PRAMEF10	O60809	474 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	STATH	P02808	62 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	PVR	P15151	417 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	TACR1	P25103	407 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	IL12A	P29459	219 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ALDH4A1	P30038	563 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	HOXD12	P35452	270 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	PPM1F	P49593	454 aa	Predicted RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	MXRA7	P84157	204 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ACSM2A	Q08AH3	577 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	CUL3	Q13618	768 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	HERC3	Q15034	1050 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SLC5A12	Q1EHB4	618 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ACSM2B	Q68CK6	577 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	FCRL6	Q6DN72	434 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SLC23A3	Q6PIS1	610 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	FIGLA	Q6QHK4	219 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	KANSL1	Q7Z3B3	1105 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	PARP9	Q8IXQ6	854 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SLC35F3	Q8IY50	421 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ARL10	Q8N8L6	244 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	RBM15B	Q8NDT2	890 aa	Known RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	CLHC1	Q8NHS4	586 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SAP25	Q8TEE9	199 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	C11orf24	Q96F05	449 aa	Predicted RBP	10.74	□□□□□ -0.69
APTX-223	ENST00000479656	EGLN2	Q96KS0	407 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	FCRL4	Q96PJ5	515 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	F2RL3	Q96RI0	385 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SERPINI1	Q99574	410 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	NPAS2	Q99743	824 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	MACROD1	Q9BQ69	325 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	BTBD10	Q9BSF8	475 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ABCG4	Q9H172	646 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ARRDC1-AS1	Q9H2J1	176 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SMOC1	Q9H4F8	434 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	SYNPO2L	Q9H987	977 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	EVA1B	Q9NVM1	165 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ASIC5	Q9NY37	505 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	ZIM2	Q9NZV7	527 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	TMED5	Q9Y3A6	229 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656		R4GN57	208 aa		10.74	□□□□□ -0.69
APTX-223	ENST00000479656	LILRA5	A6NI73	299 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	NR5A2	O00482	541 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	FBP2	O00757	339 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	GYG2	O15488	501 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	GALR2	O43603	387 aa	Predicted RBP	10.73	□□□□□ -0.69
APTX-223	ENST00000479656	GBA	P04062	536 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	PROS1	P07225	676 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	PRPS2	P11908	318 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	SDC1	P18827	310 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	MAPK1	P28482	360 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	DPP6	P42658	865 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	ZFP36L2	P47974	494 aa	Known RBP	10.73	□□□□□ -0.69
APTX-223	ENST00000479656	MNAT1	P51948	309 aa		10.73	□□□□□ -0.69
APTX-223	ENST00000479656	POLR2J	P52435	117 aa	Known RBP	10.73	□□□□□ -0.69
APTX-223	ENST00000479656	RAE1	P78406	368 aa	Known RBP	10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms