RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CASTOR2A6NHX0 329 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 SLC7A4O43246 635 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 SLU7O95391 586 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 TGDSO95455 350 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 IRF2P14316 349 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 ITIH1P19827 911 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 MUTP22033 750 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 PIK3R1P27986 724 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 HSD17B3P37058 310 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 MMP12P39900 470 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 CLDN15P56746 228 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 PTENP60484 403 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 KRT83P78385 493 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 PAX8Q06710 450 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 SCN1BQ07699 218 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 TAF10Q12962 218 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 LY6DQ14210 128 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 FASTKD3Q14CZ7 662 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 NPTX1Q15818 432 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 UGCGQ16739 394 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 LACTB2Q53H82 288 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 LBHQ53QV2 105 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 ZRANB3Q5FWF4 1079 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 XKR3Q5GH77 459 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 SHEQ5VZ18 495 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 LYSMD4Q5XG99 296 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 ENPP7Q6UWV6 458 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 TMEM182Q6ZP80 229 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 RTN4RL2Q86UN3 420 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 PIGZQ86VD9 579 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 HOGA1Q86XE5 327 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 MMD2Q8IY49 270 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 CDK20Q8IZL9 346 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 LGI2Q8N0V4 545 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 EID3Q8N140 333 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 KBTBD8Q8NFY9 601 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 C9orf43Q8TAL5 461 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 PHLDA1Q8WV24 401 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 HEXDCQ8WVB3 486 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 RAD54LQ92698 747 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 PROX1Q92786 737 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 CORO2AQ92828 525 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 EXOC4Q96A65 974 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 ERO1AQ96HE7 468 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 FAM71F1Q96KD3 344 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 CCDC114Q96M63 670 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 INPP5KQ9BT40 448 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 PRRG4Q9BZD6 226 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 MIS12Q9H081 205 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 ATP13A3Q9H7F0 1226 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 FGF21Q9NSA1 209 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 TEX10Q9NXF1 929 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 SPHK1Q9NYA1 384 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 TXNDC16Q9P2K2 825 aa2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 COL16A1Q07092 1604 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-212ENST00000474059 TRAV24A0A0B4J272 114 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 A0A1W2PPW3 197 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 FAM170AA1A519 330 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 C5orf52A6NGY3 159 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 PI4K2BG5E9Z4 385 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 ARPC2O15144 300 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 VIMP08670 466 aaKnown RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 LBPP18428 481 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 BCL3P20749 454 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 CASTP20810 708 aaKnown RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 CDH3P22223 829 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 CD27P26842 260 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 RGS7P49802 495 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 ALDH3A2P51648 485 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 MFAP3P55082 362 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 MTCP1P56278 107 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 CYCSP99999 105 aaKnown RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 CALCOCO2Q13137 446 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 TNK1Q13470 666 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 PTK6Q13882 451 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 TAZQ16635 292 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 PTGISQ16647 500 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 HIGD2BQ4VC39 106 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 NHSL2Q5HYW2 709 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 LRRC73Q5JTD7 316 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 MSANTD1Q6ZTZ1 278 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 NRARPQ7Z6K4 114 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 TIGD4Q8IY51 512 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 RYBPQ8N488 228 aaPredicted RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 POM121L12Q8N7R1 296 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 RASGEF1AQ8N9B8 481 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 OR52N5Q8NH56 324 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 ST6GALNAC6Q969X2 333 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 VMP1Q96GC9 406 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 PRICKLE1Q96MT3 831 aaPredicted RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 GAL3ST4Q96RP7 486 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 CCDC3Q9BQI4 270 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 URM1Q9BTM9 101 aaKnown RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 RPP25Q9BUL9 199 aaKnown RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 PANK2Q9BZ23 570 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 FAM49AQ9H0Q0 323 aaPredicted RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 TLE6Q9H808 572 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 LMAN1LQ9HAT1 526 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 TRPV4Q9HBA0 871 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms