RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 HSH2DQ96JZ2 352 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CNDP2Q96KP4 475 aaKnown RBP8.63□□□□□ -1.03
SYNE1-217ENST00000466159 FOPNLQ96NB1 174 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CSF3RQ99062 836 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 DGCR6LQ9BY27 220 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 RIBC2Q9H4K1 309 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 BRF2Q9HAW0 419 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SH3BP4Q9P0V3 963 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 FZD4Q9ULV1 537 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 INSL6Q9Y581 213 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 TCF20Q9UGU0 1960 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 KIAA0355O15063 1070 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 C1orf105O95561 183 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 FGF19O95750 216 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 SOD1P00441 154 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 SEMG1P04279 462 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 CYP17A1P05093 508 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 ABCB1P08183 1280 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 HLA-EP13747 358 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 NPPBP16860 134 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 CCNA2P20248 432 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 IDSP22304 550 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 FSHRP23945 695 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 AQP1P29972 269 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 CTNNB1P35222 781 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 CRYBA2P53672 197 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TMBIM6P55061 237 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 C21orf58P58505 322 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 NFATC3Q12968 1075 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 GAB1Q13480 694 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 RFX4Q33E94 735 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TBC1D25Q3MII6 688 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 ZC3H12BQ5HYM0 836 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 ERICH5Q6P6B1 374 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 KLHL35Q6PF15 583 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 CBLL1Q75N03 491 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 PGBD3Q8N328 593 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 SYNPOQ8N3V7 929 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TERB1Q8NA31 727 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 POP5Q969H6 163 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 ERLEC1Q96DZ1 483 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 HSPBAP1Q96EW2 488 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 CCDC90BQ9GZT6 254 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 OR2AG1Q9H205 316 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 C11orf49Q9H6J7 331 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TM9SF3Q9HD45 589 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 PDP1Q9P0J1 537 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 RPS6KA6Q9UK32 745 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 BLOC1S6Q9UL45 172 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 FAF1Q9UNN5 650 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 EXO1Q9UQ84 846 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 KCNE2Q9Y6J6 123 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 C1orf226A1L170 272 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 MGAT4DA6NG13 374 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 SAP18O00422 153 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 NOL3O60936 208 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 HSD3B1P14060 373 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 HOXB6P17509 224 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 NR4A1P22736 598 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 HSD3B2P26439 372 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 EPHA2P29317 976 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 RYKP34925 604 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 CLK3P49761 638 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 ARHGDIAP52565 204 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 GABARAPL2P60520 117 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TBPL1P62380 186 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 MEF2AQ02078 507 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TUBA3CQ13748 450 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 STARD3Q14849 445 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 ANKDD1AQ495B1 522 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF658BQ4V348 819 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF385BQ569K4 471 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 KDM4DQ6B0I6 523 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 MED27Q6P2C8 311 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 EIF3MQ7L2H7 374 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 NLRP8Q86W28 1048 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 HORMAD1Q86X24 394 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TRAPPC5Q8IUR0 188 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 KLHDC8AQ8IYD2 350 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 NAGSQ8N159 534 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 OR4K1Q8NGD4 311 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TBC1D15Q8TC07 691 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 SPPL3Q8TCT6 385 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 NXPE3Q969Y0 559 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TBC1D20Q96BZ9 403 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 NRBF2Q96F24 287 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 DTD2Q96FN9 168 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 LRIG1Q96JA1 1093 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 COQ10AQ96MF6 247 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 FAM210AQ96ND0 272 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 NODALQ96S42 347 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 CHST8Q9H2A9 424 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 IL23AQ9NPF7 189 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 IRAK4Q9NWZ3 460 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 TMEM9Q9P0T7 183 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 BAG5Q9UL15 447 aa8.62□□□□□ -1.03
SYNE1-217ENST00000466159 SAMHD1Q9Y3Z3 626 aaKnown RBP8.62□□□□□ -1.03
SYNE1-217ENST00000466159 PRRT4C9JH25 899 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 PCDH7O60245 1069 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms