RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 A0A1B0GX78 115 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 SYCE1LA8MT33 242 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 I3L1I5 382 aaPredicted RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 DSCR3O14972 297 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 CNOT3O75175 753 aaKnown RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 B3GALT4O96024 378 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 C1GALT1C1LP0DN25 315 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 PTPN4P29074 926 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 GRK3P35626 688 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 ARSFP54793 590 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 UCNP55089 124 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 RPS15AP62244 130 aaKnown RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 RPS15P62841 145 aaKnown RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 DCDP81605 110 aaKnown RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 REEP5Q00765 189 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 SETDB1Q15047 1291 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 PDK4Q16654 411 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 NKAIN1Q4KMZ8 207 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 FAM219BQ5XKK7 198 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 ADNP2Q6IQ32 1131 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 EMBQ6PCB8 327 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 SHISA6Q6ZSJ9 500 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 RPS27LQ71UM5 84 aaKnown RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 COX15Q7KZN9 410 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 GPR155Q7Z3F1 870 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 ASPGQ86U10 573 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 TMEM151AQ8N4L1 468 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 ARHGEF39Q8N4T4 335 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 TEX9Q8N6V9 391 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 PTGR2Q8N8N7 351 aaPredicted RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 ANKRD53Q8N9V6 530 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 ZCCHC10Q8TBK6 192 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 SLC13A3Q8WWT9 602 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 SLC45A3Q96JT2 553 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 C12orf65Q9H3J6 166 aaKnown RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 CNOT10Q9H9A5 744 aaKnown RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 PELI2Q9HAT8 420 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 GEMIN8Q9NWZ8 242 aaKnown RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 IFT80Q9P2H3 777 aaPredicted RBP11.11□□□□□ -0.63
CUX1-207ENST00000465461 SRPK3Q9UPE1 567 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 CCDC88CQ9P219 2028 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 CACNA1BQ00975 2339 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 ZFHX4Q86UP3 3567 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 TRBC2A0A5B9 178 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 CDC14CA4D256 554 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 C21orf140B9A014 251 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 CLGNO14967 610 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 FOXS1O43638 330 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 KLK8O60259 260 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 CREG1O75629 220 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 RBP1P09455 135 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 COL6A2P12110 1019 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 KRT15P19012 456 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 GNAZP19086 355 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 CD22P20273 847 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 HNF4AP41235 474 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 SCTRP47872 440 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 MAT1AQ00266 395 aaKnown RBP11.1□□□□□ -0.63
CUX1-207ENST00000465461 RELAQ04206 551 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 CHIT1Q13231 466 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 IL10RAQ13651 578 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 DOC2AQ14183 400 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 SLBPQ14493 270 aaKnown RBP eCLIP11.1□□□□□ -0.63
CUX1-207ENST00000465461 NCF4Q15080 339 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 SYT16Q17RD7 645 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 TSNAXIP1Q2TAA8 658 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 FAM214AQ32MH5 1076 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 XKR6Q5GH73 641 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 CDKL4Q5MAI5 379 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 LRRC70Q7Z2Q7 622 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 ZSCAN1Q8NBB4 408 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 PROKR1Q8TCW9 393 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 COL26A1Q96A83 441 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 TM4SF19Q96DZ7 209 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 AIF1LQ9BQI0 150 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 YIPF2Q9BWQ6 316 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 KLHL31Q9H511 634 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 OPTCQ9UBM4 332 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 GPN3Q9UHW5 284 aaPredicted RBP11.1□□□□□ -0.63
CUX1-207ENST00000465461 KCND3Q9UK17 655 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 PLAAQ9Y263 795 aa11.1□□□□□ -0.63
CUX1-207ENST00000465461 ZNF891A8MT65 544 aaPredicted RBP11.09□□□□□ -0.63
CUX1-207ENST00000465461 K7EPI3 171 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 NDUFS4O43181 175 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 DNAJB6O75190 326 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 H2AFYO75367 372 aaKnown RBP11.09□□□□□ -0.63
CUX1-207ENST00000465461 IPO13O94829 963 aaKnown RBP11.09□□□□□ -0.63
CUX1-207ENST00000465461 NUDT17P0C025 328 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 IL1RNP18510 177 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 TSPAN8P19075 237 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 EEF1DP29692 281 aaKnown RBP11.09□□□□□ -0.63
CUX1-207ENST00000465461 ALDH18A1P54886 795 aaKnown RBP11.09□□□□□ -0.63
CUX1-207ENST00000465461 IFFO1Q0D2I5 559 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 CDC20Q12834 499 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 MUM1Q2TAK8 710 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 DEFB109BQ30KR1 87 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 YOD1Q5VVQ6 348 aaPredicted RBP11.09□□□□□ -0.63
CUX1-207ENST00000465461 ATG9BQ674R7 924 aa11.09□□□□□ -0.63
CUX1-207ENST00000465461 MRPL14Q6P1L8 145 aaKnown RBP11.09□□□□□ -0.63
CUX1-207ENST00000465461 SH2D5Q6ZV89 423 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms