RNA–Protein interactions for RNA: ENST00000460485.1

ERCC3-205, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, human

TSL 3

Gene ERCC3, Length 815 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERCC3-205	ENST00000460485	OR4D2	P58180	307 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	MTPN	P58546	118 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	TAP2	Q03519	686 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	ZNF763	Q0D2J5	394 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	MESP2	Q0VG99	397 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	PRAMEF14	Q5SWL7	426 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	ZNF648	Q5T619	568 aa	Predicted RBP	13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	PRAMEF13	Q5VWM6	474 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	METRNL	Q641Q3	311 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	OR52E8	Q6IFG1	317 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	HMBOX1	Q6NT76	420 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	TMPRSS11B	Q86T26	416 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	IFNE	Q86WN2	208 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	ZNF547	Q8IVP9	402 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	CHERP	Q8IWX8	916 aa	Known RBP	13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	LRRC56	Q8IYG6	542 aa	Predicted RBP	13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	SVOPL	Q8N434	492 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	DTWD1	Q8N5C7	304 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	OR5K2	Q8NHB8	316 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	MIEF2	Q96C03	454 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	SDCCAG3	Q96C92	435 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	BIRC7	Q96CA5	298 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	APIP	Q96GX9	242 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	RNF145	Q96MT1	663 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	OR4K3	Q96R72	315 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	MYADM	Q96S97	322 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	GABRG3	Q99928	467 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	MRPS26	Q9BYN8	205 aa	Known RBP	13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	BHLHE41	Q9C0J9	482 aa	Predicted RBP	13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	TRIT1	Q9H3H1	467 aa	Known RBP	13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	RAD21L1	Q9H4I0	556 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	RPF2	Q9H7B2	306 aa	Known RBP	13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	COQ10B	Q9H8M1	238 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	TBC1D17	Q9HA65	648 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	SERHL	Q9NQF3	203 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	PNPLA3	Q9NST1	481 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	AHSP	Q9NZD4	102 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	FZD4	Q9ULV1	537 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	NEUROG3	Q9Y4Z2	214 aa		13.6	□□□□□ -0.23
ERCC3-205	ENST00000460485	SMIM31	A0A1B0GVY4	71 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	PIPSL	A2A3N6	862 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485		K7ESM1	405 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	MID1	O15344	667 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	PLRG1	O43660	514 aa	Known RBP	13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	DFNA5	O60443	496 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	PRAMEF4	O60810	478 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	PCDH8	O95206	1070 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	ABCB1	P08183	1280 aa	Predicted RBP	13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	ADRB1	P08588	477 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	HOXC4	P09017	264 aa	Predicted RBP	13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	SLC35G4	P0C7Q5	338 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	UBTFL6	P0CB48	400 aa	Predicted RBP	13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	COX7A2	P14406	83 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	PDHA2	P29803	388 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	NTSR1	P30989	418 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	METAP1	P53582	386 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	PRKCQ	Q04759	706 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	MYBPC3	Q14896	1274 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	PLA2G4E	Q3MJ16	856 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	PRAMEF9	Q5VWM5	478 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	FAM219B	Q5XKK7	198 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	NXPE4	Q6UWF7	544 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	SLC44A3	Q8N4M1	653 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	KRTCAP2	Q8N6L1	136 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	DENND6B	Q8NEG7	585 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	HUS1B	Q8NHY5	278 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	CHTF18	Q8WVB6	975 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	NEIL2	Q969S2	332 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	MTFMT	Q96DP5	389 aa	Known RBP	13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	MSANTD3	Q96H12	275 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	ZNF764	Q96H86	408 aa	Predicted RBP	13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	QRFPR	Q96P65	431 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	TSSK3	Q96PN8	268 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	PHF12	Q96QT6	1004 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	KXD1	Q9BQD3	176 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	C1QTNF2	Q9BXJ5	285 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	ZDHHC5	Q9C0B5	715 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	DMRT3	Q9NQL9	472 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	SLAMF8	Q9P0V8	285 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	FAM8A1	Q9UBU6	413 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	ZNF282	Q9UDV7	671 aa	Predicted RBP	13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	SAMD4A	Q9UPU9	718 aa	Known RBP	13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	ASF1A	Q9Y294	204 aa		13.59	□□□□□ -0.23
ERCC3-205	ENST00000460485	ATRX	P46100	2492 aa		13.58	□□□□□ -0.23
ERCC3-205	ENST00000460485	CXCR6	O00574	342 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	RNASET2	O00584	256 aa	Known RBP	13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	CCNDBP1	O95273	360 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	DNTT	P04053	509 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	SRF	P11831	508 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	NPPB	P16860	134 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	PTX3	P26022	381 aa	Predicted RBP	13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	OXTR	P30559	389 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	KIR2DL1	P43626	348 aa	Predicted RBP	13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	NEK2	P51955	445 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	SGCG	Q13326	291 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	VEZF1	Q14119	521 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	SLBP	Q14493	270 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	KRT80	Q6KB66	452 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	USP30	Q70CQ3	517 aa		13.58	□□□□□ -0.24
ERCC3-205	ENST00000460485	C17orf64	Q86WR6	236 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms