RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PPP1R3AQ16821 1122 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 TMEM214Q6NUQ4 689 aaKnown RBP18.4■□□□□ 0.54
USP40-207ENST00000450940 MAATS1Q7Z4T9 603 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 STRA8Q7Z7C7 330 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 PARP9Q8IXQ6 854 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 PRSS58Q8IYP2 241 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 ZADH2Q8N4Q0 377 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 ATL1Q8WXF7 558 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 OR4K3Q96R72 315 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 NSMCE4AQ9NXX6 385 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 IKZF3Q9UKT9 509 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 VPS4AQ9UN37 437 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 ESPL1Q14674 2120 aa18.4■□□□□ 0.54
USP40-207ENST00000450940 LOC102723996A0A087X1L8 192 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 MAP2K7O14733 419 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 EIF3HO15372 352 aaKnown RBP eCLIP18.39■□□□□ 0.53
USP40-207ENST00000450940 CDH1P12830 882 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 BCL6P41182 706 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 AVPR1BP47901 424 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 ETF1P62495 437 aaKnown RBP18.39■□□□□ 0.53
USP40-207ENST00000450940 PRR30Q53SZ7 412 aaPredicted RBP18.39■□□□□ 0.53
USP40-207ENST00000450940 AGAP7PQ5VUJ5 663 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 TMEM205Q6UW68 189 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 CYS1Q717R9 158 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 ZC3H7AQ8IWR0 971 aaKnown RBP18.39■□□□□ 0.53
USP40-207ENST00000450940 ZBED8Q8IZ13 594 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 NKAPQ8N5F7 415 aaKnown RBP18.39■□□□□ 0.53
USP40-207ENST00000450940 MFSD9Q8NBP5 474 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 CAMKVQ8NCB2 501 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 C8orf44Q96CB5 159 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 AGAP4Q96P64 663 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 RHOJQ9H4E5 214 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 LUZP4Q9P127 313 aa18.39■□□□□ 0.53
USP40-207ENST00000450940 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.39■□□□□ 0.53
USP40-207ENST00000450940 FAM95CA0A1B0GW59 222 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 FFAR3O14843 346 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 GPR42O15529 346 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 RAD51CO43502 376 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 BMP10O95393 424 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 CYC1P08574 325 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 COX6A1P12074 109 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 TAS2R39P59534 338 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 MRPS25P82663 173 aaKnown RBP18.38■□□□□ 0.53
USP40-207ENST00000450940 CALCOCO2Q13137 446 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 SYT16Q17RD7 645 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 IRAK1BP1Q5VVH5 260 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 NDUFAF7Q7L592 441 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 IQCKQ8N0W5 287 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 FAM26EQ8N5C1 309 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 OR9A4Q8NGU2 314 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 PPP4R1Q8TF05 950 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 PYCR2Q96C36 320 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 THOC3Q96J01 351 aaKnown RBP18.38■□□□□ 0.53
USP40-207ENST00000450940 LMF1Q96S06 567 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 BARD1Q99728 777 aaKnown RBP18.38■□□□□ 0.53
USP40-207ENST00000450940 POPDC3Q9HBV1 291 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 ZNF160Q9HCG1 818 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 SMYD2Q9NRG4 433 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 GRHL1Q9NZI5 618 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 SLC22A7Q9Y694 548 aa18.38■□□□□ 0.53
USP40-207ENST00000450940 IGHV1-45A0A0A0MS14 117 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 FEZF1A0PJY2 475 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 PABPN1LA6NDY0 278 aaKnown RBP18.37■□□□□ 0.53
USP40-207ENST00000450940 HEXBP07686 556 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 GNLYP22749 145 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 CXCR2P25025 360 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 GRK3P35626 688 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 UQCRFS1P47985 274 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 CCR8P51685 355 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 EFNA3P52797 238 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 CDKL1Q00532 357 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 PRSS41Q7RTY9 318 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 ASPGQ86U10 573 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 PYROXD1Q8WU10 500 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 SLC13A3Q8WWT9 602 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 PSMF1Q92530 271 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 ALKBH8Q96BT7 664 aaKnown RBP18.37■□□□□ 0.53
USP40-207ENST00000450940 SNRNP40Q96DI7 357 aaKnown RBP18.37■□□□□ 0.53
USP40-207ENST00000450940 MACROD1Q9BQ69 325 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 WDR77Q9BQA1 342 aaPredicted RBP18.37■□□□□ 0.53
USP40-207ENST00000450940 YIPF2Q9BWQ6 316 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 PCDHGA10Q9Y5H3 936 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 USP9YO00507 2555 aaPredicted RBP18.37■□□□□ 0.53
USP40-207ENST00000450940 SCN2AQ99250 2005 aa18.37■□□□□ 0.53
USP40-207ENST00000450940 NSG1A0A0A6YYJ2 146 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 TRBC2A0A5B9 178 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 CDC7O00311 574 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 ABCB7O75027 752 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 WISP3O95389 354 aaPredicted RBP18.36■□□□□ 0.53
USP40-207ENST00000450940 STATHP02808 62 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 CASQ1P31415 396 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 MAT1AQ00266 395 aaKnown RBP18.36■□□□□ 0.53
USP40-207ENST00000450940 ZNF572Q7Z3I7 529 aaPredicted RBP18.36■□□□□ 0.53
USP40-207ENST00000450940 CUZD1Q86UP6 607 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 CEP97Q8IW35 865 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 KBTBD2Q8IY47 623 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 KCT2Q8NC54 265 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 ANKRD49Q8WVL7 239 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 C19orf60Q96EN9 201 aa18.36■□□□□ 0.53
USP40-207ENST00000450940 VPS39Q96JC1 886 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms