RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 RBBP5Q15291 538 aaKnown RBP16.49■□□□□ 0.23
LIME1-202ENST00000444951 CES4AQ5XG92 561 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 ATG9BQ674R7 924 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 MILR1Q7Z6M3 343 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 SYVN1Q86TM6 617 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 PAQR7Q86WK9 346 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 ZNF740Q8NDX6 193 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 TTC9Q92623 222 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 ZUFSPQ96AP4 578 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 LIN37Q96GY3 246 aaPredicted RBP16.49■□□□□ 0.23
LIME1-202ENST00000444951 CNDP1Q96KN2 507 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 FCRL4Q96PJ5 515 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 SPNS1Q9H2V7 528 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 ZNF768Q9H5H4 540 aaKnown RBP16.49■□□□□ 0.23
LIME1-202ENST00000444951 PIEZO2Q9H5I5 2752 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 ZNF395Q9H8N7 513 aaPredicted RBP16.49■□□□□ 0.23
LIME1-202ENST00000444951 FAM60AQ9NP50 221 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 PDE7BQ9NP56 450 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 PDP2Q9P2J9 529 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 UBFD1O14562 309 aaKnown RBP16.48■□□□□ 0.23
LIME1-202ENST00000444951 FFAR3O14843 346 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 GPR42O15529 346 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 ITM2AO43736 263 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 OR1F1O43749 312 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 NPHS1O60500 1241 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 CTSVO60911 334 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 CRCPO75575 148 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 OR4F21O95013 312 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 CLDN9O95484 217 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 HSPA4LO95757 839 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 MLYCDO95822 493 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 OTCP00480 354 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 CHRNGP07510 517 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 EBLN1P0CF75 366 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 PLA2G2AP14555 144 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 HRH2P25021 359 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 CSTF2P33240 577 aaKnown RBP eCLIP16.48■□□□□ 0.23
LIME1-202ENST00000444951 GRK3P35626 688 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 UCNP55089 124 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 SH3BP2P78314 561 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 ZFP36L1Q07352 338 aaKnown RBP16.48■□□□□ 0.23
LIME1-202ENST00000444951 VAC14Q08AM6 782 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 TRAF3Q13114 568 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 SRSF6Q13247 344 aaKnown RBP16.48■□□□□ 0.23
LIME1-202ENST00000444951 RCN2Q14257 317 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 NAA25Q14CX7 972 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 C16orf72Q14CZ0 275 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 CPSF6Q16630 551 aaKnown RBP eCLIP16.48■□□□□ 0.23
LIME1-202ENST00000444951 ARL13AQ5H913 290 aaPredicted RBP16.48■□□□□ 0.23
LIME1-202ENST00000444951 TMTC4Q5T4D3 741 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 ZNF425Q6IV72 752 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 GPRIN3Q6ZVF9 776 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 ARHGAP22Q7Z5H3 698 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 ABHD11Q8NFV4 315 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 OR4F6Q8NGB9 312 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 AGR3Q8TD06 166 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 SNRNP27Q8WVK2 155 aaKnown RBP16.48■□□□□ 0.23
LIME1-202ENST00000444951 KLHL6Q8WZ60 621 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 N4BP2L2Q92802 583 aaPredicted RBP16.48■□□□□ 0.23
LIME1-202ENST00000444951 PTCD3Q96EY7 689 aaKnown RBP16.48■□□□□ 0.23
LIME1-202ENST00000444951 TCTN2Q96GX1 697 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 AIF1LQ9BQI0 150 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 STRADBQ9C0K7 418 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 DRC3Q9H069 523 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 MANSC1Q9H8J5 431 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 GEMIN8Q9NWZ8 242 aaKnown RBP16.48■□□□□ 0.23
LIME1-202ENST00000444951 FIS1Q9Y3D6 152 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 TENM4Q6N022 2769 aa16.48■□□□□ 0.23
LIME1-202ENST00000444951 SNRNP200O75643 2136 aaKnown RBP16.48■□□□□ 0.23
LIME1-202ENST00000444951 OR2A25A4D2G3 310 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 K7ENP7 123 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 PLD2O14939 933 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 TOX3O15405 576 aaPredicted RBP16.47■□□□□ 0.23
LIME1-202ENST00000444951 EFSO43281 561 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 SERPIND1P05546 499 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 ANKRD34CP0C6C1 535 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 PCNAP12004 261 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 NELFEP18615 380 aaKnown RBP16.47■□□□□ 0.23
LIME1-202ENST00000444951 CD22P20273 847 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 ARRB2P32121 409 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 ABCE1P61221 599 aaKnown RBP16.47■□□□□ 0.23
LIME1-202ENST00000444951 RHDQ02161 417 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 BST1Q10588 318 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 TRA2AQ13595 282 aaKnown RBP eCLIP16.47■□□□□ 0.23
LIME1-202ENST00000444951 LY6DQ14210 128 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 GPR19Q15760 415 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 HIST2H2ACQ16777 129 aaPredicted RBP16.47■□□□□ 0.23
LIME1-202ENST00000444951 TTC19Q6DKK2 380 aaPredicted RBP16.47■□□□□ 0.23
LIME1-202ENST00000444951 HIST2H2AA3Q6FI13 130 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 LETMD1Q6P1Q0 360 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 INO80CQ6PI98 192 aaPredicted RBP16.47■□□□□ 0.23
LIME1-202ENST00000444951 TRIM42Q8IWZ5 723 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 CARFQ8N187 725 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 KRT78Q8N1N4 520 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 CDYL2Q8N8U2 506 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 LRRC8CQ8TDW0 803 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 ZNF75CPQ92670 426 aaPredicted RBP16.47■□□□□ 0.23
LIME1-202ENST00000444951 RNF31Q96EP0 1072 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 SLC41A2Q96JW4 573 aa16.47■□□□□ 0.23
LIME1-202ENST00000444951 KCNA7Q96RP8 456 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms