RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 COG1Q8WTW3 980 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 HAS2Q92819 552 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 IMMP1LQ96LU5 166 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 CYTH2Q99418 400 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 CCDC177Q9NQR7 707 aaPredicted RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 ANKRD10Q9NXR5 420 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 PDE10AQ9Y233 779 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 VPS9D1Q9Y2B5 631 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 CACNA1DQ01668 2161 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 A0A1W2PQ72 361 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 MAGEB16A2A368 324 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 PCDH17O14917 1159 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 MAN1A2O60476 641 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 CDC123O75794 336 aaPredicted RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 UNC5CO95185 931 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 STSP08842 583 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 CDH1P12830 882 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 GABRB3P28472 473 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 GRNP28799 593 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 MAGEA3P43357 314 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 XCR1P46094 333 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 CSNK1G2P78368 415 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 NAE1Q13564 534 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 NDUFA9Q16795 377 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 PHKG1Q16816 387 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 BTBD16Q32M84 506 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 HP1BP3Q5SSJ5 553 aaPredicted RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 ABHD17BQ5VST6 288 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 SP5Q6BEB4 398 aaPredicted RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 PAQR3Q6TCH7 311 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 SLC26A11Q86WA9 606 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 PDSS2Q86YH6 399 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 RASGEF1CQ8N431 466 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.94□□□□□ -0.66
USP4-204ENST00000416417 OR5T3Q8NGG3 340 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 OR51Q1Q8NH59 317 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 METTL21AQ8WXB1 218 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 NR4A3Q92570 626 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 PYCR2Q96C36 320 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 MOCOSQ96EN8 888 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 PWWP2AQ96N64 755 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 EBNA1BP2Q99848 306 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 HES7Q9BYE0 225 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 XAB2Q9HCS7 855 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 TMEM184CQ9NVA4 438 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 UTP6Q9NYH9 597 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 STMN3Q9NZ72 180 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 TRMT6Q9UJA5 497 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 LRBAP50851 2863 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 TRGV8A0A0C4DH27 118 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 PRSS44E7EML9 344 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 TXNDC9O14530 226 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 ZNHIT1O43257 154 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 ENO3P13929 434 aaPredicted RBP10.93□□□□□ -0.66
USP4-204ENST00000416417 FDXRP22570 491 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 PER3P56645 1201 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 OLR1P78380 273 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 FAM53BQ14153 422 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 ZXDCQ2QGD7 858 aaPredicted RBP10.93□□□□□ -0.66
USP4-204ENST00000416417 MSS51Q4VC12 460 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 AGTRAPQ6RW13 159 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 RIPOR1Q6ZS17 1223 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 CPEB2Q7Z5Q1 589 aaKnown RBP10.93□□□□□ -0.66
USP4-204ENST00000416417 ANKRD37Q7Z713 158 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 IGDCC3Q8IVU1 814 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 BEST3Q8N1M1 668 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 TSLPQ969D9 159 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 MARVELD3Q96A59 401 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 LINGO1Q96FE5 620 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 TUBB6Q9BUF5 446 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 UNKQ9C0B0 810 aaKnown RBP10.93□□□□□ -0.66
USP4-204ENST00000416417 TSPAN10Q9H1Z9 355 aaPredicted RBP10.93□□□□□ -0.66
USP4-204ENST00000416417 KLHL1Q9NR64 748 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 KLHL42Q9P2K6 505 aa10.93□□□□□ -0.66
USP4-204ENST00000416417 OR5H15A6NDH6 313 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 NRDCO43847 1150 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 PRAMEF2O60811 474 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 RASAL1O95294 804 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 NSA2O95478 260 aaKnown RBP10.92□□□□□ -0.66
USP4-204ENST00000416417 RPS15AP62244 130 aaKnown RBP10.92□□□□□ -0.66
USP4-204ENST00000416417 DHX9Q08211 1270 aaKnown RBP10.92□□□□□ -0.66
USP4-204ENST00000416417 CRYMQ14894 314 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 CYP1B1Q16678 543 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 RNASEH2BQ5TBB1 312 aaKnown RBP10.92□□□□□ -0.66
USP4-204ENST00000416417 TMEM214Q6NUQ4 689 aaKnown RBP10.92□□□□□ -0.66
USP4-204ENST00000416417 C17orf64Q86WR6 236 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 C2CD4AQ8NCU7 369 aaPredicted RBP10.92□□□□□ -0.66
USP4-204ENST00000416417 ZNF740Q8NDX6 193 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 MCOLN3Q8TDD5 553 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 PEX11GQ96HA9 241 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 SIGLEC12Q96PQ1 595 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 NPAS2Q99743 824 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 FAM167BQ9BTA0 163 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 KCNK13Q9HB14 408 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 COPG2Q9UBF2 871 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 IKZF3Q9UKT9 509 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 NAALAD2Q9Y3Q0 740 aa10.92□□□□□ -0.66
USP4-204ENST00000416417 HEATR5BQ9P2D3 2071 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 A0A1B0GUH1 482 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 CTAGE15A4D2H0 777 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms