RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ACOT12Q8WYK0 555 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CRELD1Q96HD1 420 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ARL5BQ96KC2 179 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 DMRTB1Q96MA1 342 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 LENG8Q96PV6 779 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ELF4Q99607 663 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ITM2CQ9NQX7 267 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 SLCO3A1Q9UIG8 710 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 FZD4Q9ULV1 537 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 TSTD3H0UI37 97 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 TNFRSF10BO14763 440 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 SSX5O60225 188 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 WDPCPO95876 746 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 PTX3P26022 381 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ACVRL1P37023 503 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 DIO3P55073 304 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 LIN52Q52LA3 116 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 NPNTQ6UXI9 565 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 FAM71AQ8IYT1 594 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CPXM2Q8N436 756 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 MFSD2AQ8NA29 543 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 PNPLA2Q96AD5 504 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF354BQ96LW1 612 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 RNF145Q96MT1 663 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 PTCHD1Q96NR3 888 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 UTP23Q9BRU9 249 aaKnown RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 LRFN3Q9BTN0 628 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ADAM33Q9BZ11 813 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 QPCTLQ9NXS2 382 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 TNRC6CQ9HCJ0 1690 aaKnown RBP7.09□□□□□ -1.28
SCN9A-202ENST00000409435 IGKV6D-21A0A0A0MT36 114 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 H3BN98 237 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 B4GAT1O43505 415 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 LYNP07948 512 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CD79BP40259 229 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 TPMTP51580 245 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 EMP2P54851 167 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MYBPC1Q00872 1141 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF33BQ06732 778 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 RIN1Q13671 783 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SEMA3AQ14563 771 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 DSC3Q14574 896 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 PTPN20Q4JDL3 420 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 RIPOR1Q6ZS17 1223 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SPERTQ8NA61 448 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF540Q8NDQ6 660 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 TBC1D15Q8TC07 691 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 FGF14Q92915 247 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ZPBPQ9BS86 351 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ATG10Q9H0Y0 220 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 NKIRAS2Q9NYR9 191 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 UPB1Q9UBR1 384 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 FZD10Q9ULW2 581 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SPAARA0A1B0GVQ0 90 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SCRG1O75711 98 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 KCNH1O95259 989 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ZBTB11O95625 1053 aaPredicted RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 NR2F1P10589 423 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CD53P19397 219 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 IL32P24001 234 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ITGB7P26010 798 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 RORAP35398 523 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CLCN7P51798 805 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 OR2B6P58173 313 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ATP6V0D1P61421 351 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 TBX2Q13207 712 aaPredicted RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MRPL49Q13405 166 aaKnown RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 RAB12Q6IQ22 244 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MTFR2Q6P444 385 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 LRRC70Q7Z2Q7 622 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 LHFPL3Q86UP9 236 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MIER2Q8N344 545 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SMRP1Q8NCR6 262 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 FBXO36Q8NEA4 188 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 FIG4Q92562 907 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 NACC2Q96BF6 587 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 OXNAD1Q96HP4 312 aaPredicted RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MS4A14Q96JA4 679 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CST11Q9H112 138 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CRISPLD1Q9H336 500 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 EPHX3Q9H6B9 360 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ADPRHL2Q9NX46 363 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 GLS2Q9UI32 602 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 FKBPLQ9UIM3 349 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 A0A1B0GTH6 734 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CASC3O15234 703 aaKnown RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CKMT2P17540 419 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 RAB4AP20338 218 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 RBM34P42696 430 aaKnown RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MANFP55145 182 aaKnown RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 FAM189BP81408 668 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MOGSQ13724 837 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 IL18Q14116 193 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 FAM69BQ5VUD6 431 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 GRHL2Q6ISB3 625 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 TMEM53Q6P2H8 277 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 AMIGO1Q86WK6 493 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SLITRK4Q8IW52 837 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 DRAXINQ8NBI3 349 aaPredicted RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms