RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 MDC1Q14676 2089 aaKnown RBP18.93■□□□□ 0.62
PDLIM2-207ENST00000409417 CACNA1GO43497 2377 aa18.93■□□□□ 0.62
PDLIM2-207ENST00000409417 C9J4A7 227 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 OR1F1O43749 312 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 CCNT2O60583 730 aaKnown RBP18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 CDH16O75309 829 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 KATNA1O75449 491 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 ONECUT2O95948 504 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 MC1RQ01726 317 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 NAA30Q147X3 362 aaPredicted RBP18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 NCF4Q15080 339 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 ARHGEF39Q8N4T4 335 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 MREGQ8N565 214 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 SNX31Q8N9S9 440 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 ZNF740Q8NDX6 193 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 EPS8L3Q8TE67 593 aaKnown RBP18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 TM4SF19Q96DZ7 209 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 SCYL1Q96KG9 808 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 C10orf90Q96M02 699 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 RUFY1Q96T51 708 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 EHD1Q9H4M9 534 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 ACTL8Q9H568 366 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 FARSAQ9Y285 508 aaKnown RBP18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 ASB1Q9Y576 335 aa18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 MRPS18BQ9Y676 258 aaKnown RBP18.92■□□□□ 0.62
PDLIM2-207ENST00000409417 P2RX6O15547 441 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 RECKO95980 971 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 C1GALT1C1LP0DN25 315 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 ITGAXP20702 1163 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 VARSP26640 1264 aaKnown RBP18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 REEP5Q00765 189 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 SETDB1Q15047 1291 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 CRTC2Q53ET0 693 aaPredicted RBP18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 ATG9BQ674R7 924 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 PRMT9Q6P2P2 845 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 ASPGQ86U10 573 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 CAMKVQ8NCB2 501 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 SLC13A3Q8WWT9 602 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 MRPL46Q9H2W6 279 aaKnown RBP18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 IFT80Q9P2H3 777 aaPredicted RBP18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 XPR1Q9UBH6 696 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 OPTCQ9UBM4 332 aa18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 TNPO3Q9Y5L0 923 aaKnown RBP18.91■□□□□ 0.62
PDLIM2-207ENST00000409417 SMIM23A6NLE4 172 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 CLGNO14967 610 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 NKX2-8O15522 239 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 H2AFYO75367 372 aaKnown RBP18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 CREG1O75629 220 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 MED26O95402 600 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 PYGBP11216 843 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 PIM1P11309 404 aaPredicted RBP18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 CXCR2P25025 360 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 AHRP35869 848 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 SCTRP47872 440 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 METTL2BQ6P1Q9 378 aaKnown RBP18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 ENDOVQ8N8Q3 282 aaKnown RBP18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 OR2W6PQ8NHA6 318 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 MVB12AQ96EY5 273 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 PITHD1Q9GZP4 211 aaPredicted RBP18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 SPNS1Q9H2V7 528 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 SLC22A11Q9NSA0 550 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 GEMIN8Q9NWZ8 242 aaKnown RBP18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 CPSF2Q9P2I0 782 aaKnown RBP18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 ZFP69BQ9UJL9 534 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 TMCO1Q9UM00 188 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 LHX6Q9UPM6 363 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 FER1L5A0AVI2 2057 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 FAM208BQ5VWN6 2430 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 GOLGA8RI6L899 631 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 K7EPI3 171 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 STATHP02808 62 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 CD63P08962 238 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 KRT15P19012 456 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 EPORP19235 508 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 NFKB2Q00653 900 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 PWP1Q13610 501 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 FAM53BQ14153 422 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 PCBP2Q15366 365 aaKnown RBP eCLIP18.9■□□□□ 0.629e-7■■■■□ 24.1
PDLIM2-207ENST00000409417 NDUFA9Q16795 377 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 CYP4X1Q8N118 509 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 TMEM151AQ8N4L1 468 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 WDR34Q96EX3 536 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 DRC3Q9H069 523 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 GPN3Q9UHW5 284 aaPredicted RBP18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 TCFL5Q9UL49 500 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 CDC14AQ9UNH5 594 aa18.9■□□□□ 0.62
PDLIM2-207ENST00000409417 A0A1W2PPM1 405 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 TK2O00142 265 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 PRAMEF4O60810 478 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 GSTA1P08263 222 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 SLC35G6P0C7Q6 338 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 EPB42P16452 691 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 CASP2P42575 452 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 OR1D4P47884 311 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 CYP4F2P78329 520 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 PCDH1Q08174 1060 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 IFFO1Q0D2I5 559 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 SLC9A5Q14940 896 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 TBCCQ15814 346 aa18.89■□□□□ 0.61
PDLIM2-207ENST00000409417 XKR6Q5GH73 641 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms