RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 CEACAM20Q6UY09 585 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 OR5AK3PQ8NH89 298 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 HAPLN3Q96S86 360 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 PKP2Q99959 881 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 TMEM121BQ9BXQ6 578 aaPredicted RBP13.6□□□□□ -0.23
COL4A3-202ENST00000396578 ADAP2Q9NPF8 381 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.6□□□□□ -0.23
COL4A3-202ENST00000396578 LMTK2Q8IWU2 1503 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 H0YGN5 161 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 CASRP41180 1078 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 NUDT6P53370 316 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 CDH11P55287 796 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 HNRNPDQ14103 355 aaKnown RBP13.6□□□□□ -0.23
COL4A3-202ENST00000396578 CYP1B1Q16678 543 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 ZNF514Q96K75 400 aaPredicted RBP13.6□□□□□ -0.23
COL4A3-202ENST00000396578 CGREF1Q99674 301 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 HEPHQ9BQS7 1158 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 NDUFS4O43181 175 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 UGT2B10P36537 528 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 TAS2R39P59534 338 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 RAB5BP61020 215 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 EEF1DP3Q658K8 133 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 DCDC5Q6ZRR9 648 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 VTCN1Q7Z7D3 282 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 NFKBIDQ8NI38 313 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 PCED1BQ96HM7 432 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 PHOX2BQ99453 314 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 NPPAP01160 153 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 FGL1Q08830 312 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 USP50Q70EL3 339 aaPredicted RBP13.6□□□□□ -0.23
COL4A3-202ENST00000396578 BTBD1Q9H0C5 482 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 HIF3AQ9Y2N7 669 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 MROH2AA6NES4 1674 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 PLD2O14939 933 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 TGFB1P01137 390 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 GKN3PP0CG01 181 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 CLCNKBP51801 687 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 TAS2R50P59544 299 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 OR7D4Q8NG98 312 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 SMARCD2Q92925 531 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 ISOC1Q96CN7 298 aa13.6□□□□□ -0.23
COL4A3-202ENST00000396578 AGAP5A6NIR3 686 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 AGPSO00116 658 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 TLX2O43763 284 aaPredicted RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 DDNO94850 711 aaPredicted RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 FOXN2P32314 431 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 C3orf33Q6P1S2 294 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 SLC16A9Q7RTY1 509 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 C9IYK1 514 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 CST3P01034 146 aaPredicted RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 BCKDHAP12694 445 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 IL7P13232 177 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 XRCC1P18887 633 aaPredicted RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 GJA9P57773 515 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 GPAT4Q86UL3 456 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 MFSD2AQ8NA29 543 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 CYP2S1Q96SQ9 504 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 GLIS2Q9BZE0 524 aaPredicted RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 KIF1AQ12756 1690 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 TRBC2A0A5B9 178 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 MSL3P1P0C860 447 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 CSNK2A2P19784 350 aaPredicted RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 BLKP51451 505 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 HADHBP55084 474 aaKnown RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 MAP2K5Q13163 448 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 SLBPQ14493 270 aaKnown RBP eCLIP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 PIAS4Q8N2W9 510 aaPredicted RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 NINJ1Q92982 152 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 ACBD6Q9BR61 282 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 SLC32A1Q9H598 525 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 ITM2CQ9NQX7 267 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 NR2E3Q9Y5X4 410 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 C2CD4BA6NLJ0 364 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 KLK1P06870 262 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 IL3P08700 152 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 SEMA3AQ14563 771 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 SUN3Q8TAQ9 357 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 NR4A3Q92570 626 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 MTFR1LQ9H019 292 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 MS4A12Q9NXJ0 267 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 UTS2RQ9UKP6 389 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 ARHGAP23Q9P227 1491 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 A8MV72 311 aaPredicted RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 CH25HO95992 272 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 TRMT10BQ6PF06 316 aaKnown RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 HSDL2Q6YN16 418 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 MMP27Q9H306 513 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 PREBQ9HCU5 417 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 DIP2CQ9Y2E4 1556 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 H7C417 338 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 ITM2AO43736 263 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 ALPPL2P10696 532 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 FOSL1P15407 271 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 SP2Q02086 613 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 HNRNPA0Q13151 305 aaKnown RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 LAS2Q8IYD9 372 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 GRHPRQ9UBQ7 328 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 LYPLA2O95372 231 aa13.59□□□□□ -0.23
COL4A3-202ENST00000396578 CTSOP43234 321 aaPredicted RBP13.59□□□□□ -0.23
COL4A3-202ENST00000396578 MOB2Q70IA6 237 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms