RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 NAT6Q93015 286 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 ATP6V1E2Q96A05 226 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 DRC3Q9H069 523 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 RAB33BQ9H082 229 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 STMN4Q9H169 189 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 MANSC1Q9H8J5 431 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 MID1IP1Q9NPA3 183 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 MED4Q9NPJ6 270 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 INTS9Q9NV88 658 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 DNAJC11Q9NVH1 559 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 SIDT1Q9NXL6 827 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 SPATA7Q9P0W8 599 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 BTRCQ9Y297 605 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 SDK2Q58EX2 2172 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 MAGEB17A8MXT2 336 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 H0YGG7 62 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 OR1F1O43749 312 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 DUX1O43812 170 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 MT-CO3P00414 261 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 TGFB1P01137 390 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 NTRK1P04629 796 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 C1GALT1C1LP0DN25 315 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 SLC2A4P14672 509 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 GNAZP19086 355 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 CSRP1P21291 193 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 SLC1A6P48664 564 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 ARF3P61204 181 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 IRF8Q02556 426 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 SPIDRQ14159 915 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 SLBPQ14493 270 aaKnown RBP eCLIP3.85□□□□□ -1.79
LIG4-201ENST00000356922 ZRSR2Q15696 482 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 CDKL4Q5MAI5 379 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 PWWP2BQ6NUJ5 590 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 CUZD1Q86UP6 607 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 LCA5Q86VQ0 697 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 PDSS2Q86YH6 399 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 RBM12BQ8IXT5 1001 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 C19orf47Q8N9M1 422 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 HUS1BQ8NHY5 278 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 ZNF501Q96CX3 271 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 ZNF317Q96PQ6 595 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 CDC6Q99741 560 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 NTMT1Q9BV86 223 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 SLC7A5P2Q9GIP4 190 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 OR51B5Q9H339 312 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 C1GALT1Q9NS00 363 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 KLK13Q9UKR3 277 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 CDV3Q9UKY7 258 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 KCNE2Q9Y6J6 123 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 IGSF10Q6WRI0 2623 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 A0A0J9YY10 115 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 TCP11X1B4DZS4 312 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 BIRC5O15392 142 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 CSO75390 466 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 PDYNP01213 254 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 EIF2S1P05198 315 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 ITGAXP20702 1163 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 MDH1P40925 334 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 CASP2P42575 452 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 VSX2P58304 361 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 ABCE1P61221 599 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 LCP2Q13094 533 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 DDX39BQ13838 428 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 RBBP5Q15291 538 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 ATG9BQ674R7 924 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 FAM180BQ6P0A1 224 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 FAM199XQ6PEV8 388 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 MILR1Q7Z6M3 343 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 CROCCP2Q86T23 111 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 C17orf64Q86WR6 236 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 PLXDC1Q8IUK5 500 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.85□□□□□ -1.79
LIG4-201ENST00000356922 D2HGDHQ8N465 521 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 METTL27Q8N6F8 245 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 L3MBTL4Q8NA19 623 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 RDH11Q8TC12 318 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 TM4SF19Q96DZ7 209 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 FAM122AQ96E09 287 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 WDR34Q96EX3 536 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 OR6C1Q96RD1 312 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 F2RL3Q96RI0 385 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 EBF4Q9BQW3 602 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 ZNF717Q9BY31 904 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 WDR55Q9H6Y2 383 aaPredicted RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 KCNK13Q9HB14 408 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 DHCR7Q9UBM7 475 aaKnown RBP3.85□□□□□ -1.79
LIG4-201ENST00000356922 KLK4Q9Y5K2 254 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 B3GALT1Q9Y5Z6 326 aa3.85□□□□□ -1.79
LIG4-201ENST00000356922 CHD6Q8TD26 2715 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 URB1O60287 2271 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 TLCD2A6NGC4 264 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 C9orf172C9J069 976 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 CRCPO75575 148 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 ESRRBO95718 433 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 LINC00032P0C843 101 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 PCDH1Q08174 1060 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 ILF2Q12905 390 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 RCN2Q14257 317 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms