RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 TMEM125Q96AQ2 219 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 IL17FQ96PD4 163 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 TEX101Q9BY14 249 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 WDR26Q9H7D7 661 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 FZD3Q9NPG1 666 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 CD93Q9NPY3 652 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 TMEM45AQ9NWC5 275 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 FRRS1LQ9P0K9 344 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 CD207Q9UJ71 328 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 CORINQ9Y5Q5 1042 aa8.91□□□□□ -0.98
ATG4A-202ENST00000345734 CFAP20Q9Y6A4 193 aaKnown RBP8.91□□□□□ -0.98
ATG4A-202ENST00000345734 M0R082 166 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 IFRD1O00458 451 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 PLRG1O43660 514 aaKnown RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 RNGTTO60942 597 aaKnown RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 DNTTP04053 509 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 ALAS2P22557 587 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 TACR1P25103 407 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 ADPRHP54922 357 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 RPS21P63220 83 aaKnown RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 DDX39BQ13838 428 aaKnown RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 COL9A2Q14055 689 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 LRRC36Q1X8D7 754 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 FAM174BQ3ZCQ3 159 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 LPCAT4Q643R3 524 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 DLEU7Q6UYE1 221 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 FAM124AQ86V42 546 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 LRRC56Q8IYG6 542 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 C2orf73Q8N5S3 287 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 OR5AR1Q8NGP9 310 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 ZNF417Q8TAU3 575 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 WDR20Q8TBZ3 569 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 NEIL2Q969S2 332 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 WDR89Q96FK6 387 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 CMTM7Q96FZ5 175 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 APOLD1Q96LR9 279 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 ZNF587Q96SQ5 575 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 MTERF1Q99551 399 aaKnown RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 MYOCQ99972 504 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 SLC17A9Q9BYT1 436 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 DPY30Q9C005 99 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 VCX3BQ9H321 246 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 VCX3AQ9NNX9 186 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 MRPL40Q9NQ50 206 aaKnown RBP8.9□□□□□ -0.98
ATG4A-202ENST00000345734 GALNT8Q9NY28 637 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 ASIC5Q9NY37 505 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 ASF1AQ9Y294 204 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 HEATR5BQ9P2D3 2071 aa8.9□□□□□ -0.98
ATG4A-202ENST00000345734 TBC1D3DA0A087WVF3 549 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TBC1D3IA0A087WXS9 549 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TBC1D3EA0A087X179 549 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TBC1D3KA0A087X1G2 549 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 FAM86C2PA6NEL3 165 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TBC1D3FA6NER0 549 aaPredicted RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TBC1D3LB9A6J9 549 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 LATO43561 262 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 UGDHO60701 494 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 SH3BGRLO75368 114 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TBC1D3HP0C7X1 549 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 NPPBP16860 134 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 ATP6V1B2P21281 511 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 PRPH2P23942 346 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 MAOBP27338 520 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 RPL10P27635 214 aaKnown RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 PEX2P28328 305 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TRIM23P36406 574 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 PPP2CBP62714 309 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 PPP2CAP67775 309 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 PLOD1Q02809 727 aaPredicted RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 FOXM1Q08050 763 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TRAP1Q12931 704 aaKnown RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 SGCGQ13326 291 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 SELPLGQ14242 412 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 SF1Q15637 639 aaKnown RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 SPANXN4Q5MJ08 99 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 WIPI1Q5MNZ9 446 aaPredicted RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 CATSPEREQ5SY80 951 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 METRNLQ641Q3 311 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TBC1D3GQ6DHY5 549 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TBC1D3CQ6IPX1 549 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 GRHL2Q6ISB3 625 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 CAPN13Q6MZZ7 669 aaPredicted RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TMPRSS11BQ86T26 416 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 RALGPS2Q86X27 583 aaPredicted RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TBC1D3Q8IZP1 549 aaPredicted RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 SLC44A3Q8N4M1 653 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 OXR1Q8N573 874 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 DPP10Q8N608 796 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 FAM131CQ96AQ9 280 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 PPM1MQ96MI6 270 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TSSK3Q96PN8 268 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 ZBTB18Q99592 522 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 EBPLQ9BY08 206 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 KCNK12Q9HB15 430 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 SGK2Q9HBY8 427 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 QPCTLQ9NXS2 382 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 BCAP29Q9UHQ4 241 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 USP22Q9UPT9 525 aa8.9□□□□□ -0.99
ATG4A-202ENST00000345734 TDRKHQ9Y2W6 561 aaKnown RBP8.9□□□□□ -0.99
ATG4A-202ENST00000345734 SLC31A1O15431 190 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms