RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 KCNK10P57789 538 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 IRF8Q02556 426 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 ZNF33BQ06732 778 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 PMS2P3Q13401 168 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 TOP3AQ13472 1001 aaPredicted RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 SGO1Q5FBB7 561 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 CAPN13Q6MZZ7 669 aaPredicted RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 KIAA1324Q6UXG2 1013 aaKnown RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 FAM83HQ6ZRV2 1179 aaPredicted RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 SPPL2CQ8IUH8 684 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 TBC1D15Q8TC07 691 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 SELENOMQ8WWX9 145 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 CGREF1Q99674 301 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 BCL7BQ9BQE9 202 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 ZDHHC5Q9C0B5 715 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 LIN28AQ9H9Z2 209 aaKnown RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 GPRC5BQ9NZH0 403 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 SLC23A2Q9UGH3 650 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 ACSL5Q9ULC5 683 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 EIF3LQ9Y262 564 aaKnown RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 PCDHA9Q9Y5H5 950 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 PCYT1BQ9Y5K3 369 aaPredicted RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 KPNA4O00629 521 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 ARPC2O15144 300 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 ACOX3O15254 700 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 BCL10O95999 233 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 HPRP00739 348 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 PDYNP01213 254 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 INHBBP09529 407 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 PCSK2P16519 638 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 SLC6A2P23975 617 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 VARSP26640 1264 aaKnown RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 HTR1EP28566 365 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 IGFALSP35858 605 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 HNF4AP41235 474 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 TDGQ13569 410 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 SMAD2Q15796 467 aaKnown RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 CLPPQ16740 277 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 CYP51A1Q16850 503 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 XKR6Q5GH73 641 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 GPR107Q5VW38 600 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 TMEM92Q6UXU6 159 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 KCTD8Q6ZWB6 473 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 FAM124AQ86V42 546 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 SYTL1Q8IYJ3 562 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 RGL4Q8IZJ4 473 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 ZNF480Q8WV37 535 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 RAD51AP1Q96B01 352 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 HBEGFQ99075 208 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 KCTD14Q9BQ13 255 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 APOOQ9BUR5 198 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 LRTM1Q9HBL6 345 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 FARSBQ9NSD9 589 aaKnown RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 C1orf109Q9NX04 203 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 LEF1Q9UJU2 399 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 OAZ3Q9UMX2 235 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 ASF1AQ9Y294 204 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 KCNE2Q9Y6J6 123 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 A0A1B0GTW7 788 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 FAM234BA2RU67 622 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 SHISA7A6NL88 538 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 CACNB4O00305 520 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 SLC31A1O15431 190 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 SEC22BO75396 215 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 DEAF1O75398 565 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 EEDO75530 441 aaKnown RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 HOXC4P09017 264 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 NDUFV2P19404 249 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 KELP23276 732 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 MAT2AP31153 395 aaKnown RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 HOXD12P35452 270 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 CASP2P42575 452 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 POLR2JP52435 117 aaKnown RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 UFM1P61960 85 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 ADARB1P78563 741 aaKnown RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 DMPKQ09013 629 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 RGS21Q2M5E4 152 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 RFTN2Q52LD8 501 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 CYBRD1Q53TN4 286 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 TTC23Q5W5X9 447 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 FRG2Q64ET8 278 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 DCDC5Q6ZRR9 648 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 RETREG3Q86VR2 466 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 TRIM69Q86WT6 500 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 ZFAND4Q86XD8 727 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 GALNT13Q8IUC8 556 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 EPHX4Q8IUS5 362 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 DENND6BQ8NEG7 585 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 OR13F1Q8NGS4 319 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 SNRNP27Q8WVK2 155 aaKnown RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 TFGQ92734 400 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 MTFMTQ96DP5 389 aaKnown RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 AURKBQ96GD4 344 aaPredicted RBP12.37□□□□□ -0.43
CLK3-201ENST00000345005 FRG2BQ96QU4 278 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 TIMM29Q9BSF4 260 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 ALG2Q9H553 416 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 CMTM6Q9NX76 183 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 ASIC5Q9NY37 505 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 PSME2Q9UL46 239 aa12.37□□□□□ -0.43
CLK3-201ENST00000345005 CDC14AQ9UNH5 594 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms