RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CASP9P55211 416 aa18.67■□□□□ 0.58
COL9A3-201ENST00000343916 MEF2AQ02078 507 aaPredicted RBP18.67■□□□□ 0.58
COL9A3-201ENST00000343916 EPS8Q12929 822 aa18.67■□□□□ 0.58
COL9A3-201ENST00000343916 ANKDD1AQ495B1 522 aa18.67■□□□□ 0.58
COL9A3-201ENST00000343916 SH3BP4Q9P0V3 963 aa18.67■□□□□ 0.58
COL9A3-201ENST00000343916 KCNE2Q9Y6J6 123 aa18.67■□□□□ 0.58
COL9A3-201ENST00000343916 ANTXRLA6NF34 631 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF701M0R085 212 aaPredicted RBP18.66■□□□□ 0.58
COL9A3-201ENST00000343916 ZSCAN9O15535 394 aaPredicted RBP18.66■□□□□ 0.58
COL9A3-201ENST00000343916 PRMT3O60678 531 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 FKBP9O95302 570 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 SRPRAP08240 638 aaKnown RBP18.66■□□□□ 0.58
COL9A3-201ENST00000343916 HTR1AP08908 422 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 AQP1P29972 269 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 NUP107P57740 925 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 ISL1P61371 349 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 GAB1Q13480 694 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 CPTPQ5TA50 214 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 RAET1GQ6H3X3 334 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 DHRS4L2Q6PKH6 230 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 SLCO4C1Q6ZQN7 724 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 FKBP9P1Q75LS8 142 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 GPR155Q7Z3F1 870 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 HIPK1Q86Z02 1210 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 COQ10AQ96MF6 247 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 RAD9AQ99638 391 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 BRF2Q9HAW0 419 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 AASSQ9UDR5 926 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 CD247P20963 164 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 TTKP33981 857 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 RBM48Q5RL73 367 aaKnown RBP18.66■□□□□ 0.58
COL9A3-201ENST00000343916 OR2T5Q6IEZ7 315 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 BPIFB6Q8NFQ5 453 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 OR13F1Q8NGS4 319 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 OR2T29Q8NH02 315 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 CNIH3Q8TBE1 160 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 HDAC2Q92769 488 aaKnown RBP18.66■□□□□ 0.58
COL9A3-201ENST00000343916 BADQ92934 168 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 MYOCQ99972 504 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 LHPPQ9H008 270 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 PLGRKTQ9HBL7 147 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 FZD4Q9ULV1 537 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 XIRP2A4UGR9 3374 aa18.66■□□□□ 0.58
COL9A3-201ENST00000343916 MGAT4DA6NG13 374 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 PTGES3LE9PB15 166 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 SLC9A3R1O14745 358 aaPredicted RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 MMP20O60882 483 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 ABCB7O75027 752 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 TFPTP0C1Z6 253 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 IGFBP5P24593 272 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF33BQ06732 778 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 RAPSNQ13702 412 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF658BQ4V348 819 aaPredicted RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 SHQ1Q6PI26 577 aaKnown RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 CRTC3Q6UUV7 619 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF554Q86TJ5 538 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 NLRP8Q86W28 1048 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 C12orf76Q8N812 135 aaPredicted RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF420Q8TAQ5 688 aaPredicted RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 CHTF18Q8WVB6 975 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 ARRDC3Q96B67 414 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF707Q96C28 371 aaPredicted RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 TPD52L3Q96J77 140 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 HSH2DQ96JZ2 352 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 DOK1Q99704 481 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 PCDHB11Q9Y5F2 797 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 LILRB5O75023 590 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 NPPBP16860 134 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 SIM2Q14190 667 aaPredicted RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 PDE12Q6L8Q7 609 aaKnown RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 MED27Q6P2C8 311 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 TRMT11Q7Z4G4 463 aaKnown RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 ZBTB46Q86UZ6 589 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 SPARTQ8N0X7 666 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 OR4K1Q8NGD4 311 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 SNX19Q92543 992 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 EXO1Q9UQ84 846 aaKnown RBP18.65■□□□□ 0.58
COL9A3-201ENST00000343916 PRKAB1Q9Y478 270 aa18.65■□□□□ 0.58
COL9A3-201ENST00000343916 TGFB1P01137 390 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 FABP3P05413 133 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 IMPDH2P12268 514 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 HSD3B1P14060 373 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 IDSP22304 550 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 HSD3B2P26439 372 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 GPR1P46091 355 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 DAPP51397 102 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 FNDC3BQ53EP0 1204 aaKnown RBP18.64■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF385BQ569K4 471 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.64■□□□□ 0.582e-6■■■■□ 25.2
COL9A3-201ENST00000343916 IER5LQ5T953 404 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF691Q5VV52 312 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 XKR5Q6UX68 686 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF547Q8IVP9 402 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 SPNS1Q9H2V7 528 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 ORC6Q9Y5N6 252 aa18.64■□□□□ 0.58
COL9A3-201ENST00000343916 SH3PXD2BA1X283 911 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 BCKDKO14874 412 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 XPNPEP2O43895 674 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 PCDH7O60245 1069 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 C6P13671 934 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms