RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 NUP188Q5SRE5 1749 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 FKBP1CQ5VVH2 108 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 CGB2Q6NT52 195 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 UGT2A3Q6UWM9 527 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 SHFQ7M4L6 423 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 OTOP2Q7RTS6 562 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 CMTR2Q8IYT2 770 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 SCML4Q8N228 414 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 WDTC1Q8N5D0 677 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ASCC1Q8N9N2 400 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 GALNT6Q8NCL4 622 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 OR52B6Q8NGF0 335 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 TSPAN18Q96SJ8 248 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 CENPMQ9NSP4 180 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ATPIF1Q9UII2 106 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ZNF214Q9UL59 606 aaPredicted RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 PLAGL1Q9UM63 463 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 FARSAQ9Y285 508 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 RPL36Q9Y3U8 105 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 A0A1B0GV50 99 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 TRIM64A6NGJ6 449 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 BEST1O76090 585 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 CXCL14O95715 111 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ANXA8P13928 327 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 HSD3B1P14060 373 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 MATN1P21941 496 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 PSMD8P48556 350 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 PDX1P52945 283 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 SMCO1Q147U7 214 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 C18orf21Q32NC0 220 aaPredicted RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 RUNDC3AQ59EK9 446 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 UBXN11Q5T124 520 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 SNX20Q7Z614 316 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 C14orf80Q86SX3 495 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 RELL1Q8IUW5 271 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 NIPA2Q8N8Q9 360 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 OR14C36Q8NHC7 312 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 SLC35F5Q8WV83 523 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 DPF3Q92784 378 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 PYURFQ96I23 114 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 MCCC1Q96RQ3 725 aaPredicted RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 TFB2MQ9H5Q4 396 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 KIAA1522Q9P206 1035 aaPredicted RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 RUVBL1Q9Y265 456 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 PCDHGA11Q9Y5H2 935 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 REV3LO60673 3130 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 A0A1B0GVM2 712 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 A8MUA0 341 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 CACNB4O00305 520 aaPredicted RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 GIMD1P0DJR0 217 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 ETV4P43268 484 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 SLC9A3P48764 834 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 MMP14P50281 582 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 AIF1P55008 147 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 CBLBQ13191 982 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 C22orf42Q6IC83 251 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 MTFR2Q6P444 385 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 ENPP6Q6UWR7 440 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 GOLGA7Q7Z5G4 137 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 BEND7Q8N7W2 519 aaPredicted RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 OR10H5Q8NGA6 315 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 MRPL9Q9BYD2 267 aaKnown RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 NAA50Q9GZZ1 169 aaKnown RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 MUC13Q9H3R2 512 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 CUEDC1Q9NWM3 386 aaPredicted RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 GMPR2Q9P2T1 348 aaKnown RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 NLKQ9UBE8 527 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 POU2F3Q9UKI9 436 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 HCN2Q9UL51 889 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 ATRNL1Q5VV63 1379 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 MYH8P13535 1937 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 RBM47A0AV96 593 aaKnown RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 SH3PXD2BA1X283 911 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 ELOA3DA6NLF2 546 aaPredicted RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 GPR89AB7ZAQ6 455 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 PPP6CO00743 305 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 LCKP06239 509 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 RB1P06400 928 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 FHP07954 510 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 GPR89BP0CG08 455 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 UQCRC1P31930 480 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 EIF1AXP47813 144 aaKnown RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 DNASE1L1P49184 302 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 CDK6Q00534 326 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 CHAF1BQ13112 559 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 LASP1Q14847 261 aaKnown RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 ELOA3BQ3SY89 546 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 PRPF38BQ5VTL8 546 aaKnown RBP8.44□□□□□ -1.06
RTN3-202ENST00000339997 FRG2Q64ET8 278 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 TXNDC8Q6A555 127 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 SLC25A25Q6KCM7 469 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 FAM92BQ6ZTR7 304 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 TICAM1Q8IUC6 712 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 ZNF676Q8N7Q3 588 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 ANKFN1Q8N957 763 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 ELOA3Q8NG57 546 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 OR51G2Q8NGK0 314 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 KLHL6Q8WZ60 621 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 PPP1R16AQ96I34 528 aa8.44□□□□□ -1.06
RTN3-202ENST00000339997 ALPK1Q96QP1 1244 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms