RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ABCB9Q9NP78 766 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 ASAH2Q9NR71 780 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 TRAPPC4Q9Y296 219 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 GBF1Q92538 1859 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 A0A1W2PQH9 124 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 LRRTM2O43300 516 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 MRPS14O60783 128 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 OR2B3O76000 313 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 KCNK5O95279 499 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 CSF3P09919 207 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 RGRP47804 291 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 ABHD18Q0P651 414 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 NFE2L1Q14494 772 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 INO80DQ53TQ3 878 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 ZNF621Q6ZSS3 439 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 USP50Q70EL3 339 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 GLT6D1Q7Z4J2 308 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 SLC51BQ86UW2 128 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 TMC8Q8IU68 726 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 PAF1Q8N7H5 531 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 FLCNQ8NFG4 579 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 OR4M2Q8NGB6 313 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 WDR36Q8NI36 951 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 EGFL8Q99944 293 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 GON7Q9BXV9 100 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 MALT1Q9UDY8 824 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 SNX7Q9UNH6 387 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 DNAJC25-GNG10A0A024R161 153 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 PLA2G10O15496 165 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 FFAR2O15552 330 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 CPSF4O95639 269 aaKnown RBP13□□□□□ -0.33
CCDC88C-201ENST00000331194 C9P02748 559 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 MSL3P1P0C860 447 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 KCNQ1P51787 676 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 CRYBA2P53672 197 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 SF1Q15637 639 aaKnown RBP13□□□□□ -0.33
CCDC88C-201ENST00000331194 IQCCQ4KMZ1 466 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 TIGD5Q53EQ6 642 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 SBSNQ6UWP8 590 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 PEX13Q92968 403 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 KCNH6Q9H252 994 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 RNF121Q9H920 327 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 TRIP12Q14669 1992 aaPredicted RBP13□□□□□ -0.33
CCDC88C-201ENST00000331194 CIB4A0PJX0 185 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 NT5C1B-RDH14C9J2C7 533 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 WDR47O94967 919 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 OTCP00480 354 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 ACPPP15309 386 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 ZNF250P15622 560 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 HOXB8P17481 243 aaPredicted RBP13□□□□□ -0.33
CCDC88C-201ENST00000331194 CD72P21854 359 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 MC4RP32245 332 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 BRCC3P46736 316 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 GZMKP49863 264 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 TSEN54Q7Z6J9 526 aaKnown RBP13□□□□□ -0.33
CCDC88C-201ENST00000331194 OR9Q2Q8NGE9 314 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 CDC26Q8NHZ8 85 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 SETD6Q8TBK2 473 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 BRI3BPQ8WY22 251 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 REPS1Q96D71 796 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 C8orf48Q96LL4 319 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 SLC22A4Q9H015 551 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 OLA1Q9NTK5 396 aaKnown RBP13□□□□□ -0.33
CCDC88C-201ENST00000331194 TMEM45AQ9NWC5 275 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 ABI2Q9NYB9 513 aaPredicted RBP13□□□□□ -0.33
CCDC88C-201ENST00000331194 POLHQ9Y253 713 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 KLK4Q9Y5K2 254 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 RALGAPA2Q2PPJ7 1873 aa13□□□□□ -0.33
CCDC88C-201ENST00000331194 B8ZZF3 427 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 CLIC1O00299 241 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 WNT9AO14904 365 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 FGF1P05230 155 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 CLCN7P51798 805 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 ZNF140P52738 457 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 RPS14P62263 151 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 CTAG1AP78358 180 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 SCN1BQ07699 218 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 TATDN3Q17R31 274 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 VMACQ2NL98 169 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 TRIM71Q2Q1W2 868 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 C5orf22Q49AR2 442 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 PTOV1Q86YD1 416 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 ZZZ3Q8IYH5 903 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 UMODL1-AS1Q8N2C9 162 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 FBXL6Q8N531 539 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 TMEM203Q969S6 136 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 GTPBP3Q969Y2 492 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 PTPN18Q99952 460 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 EBPLQ9BY08 206 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 DUSP12Q9UNI6 340 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 RANBP2P49792 3224 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 ANKRD36A6QL64 1941 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 A0A0D9SEW6 157 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 TNFRSF21O75509 655 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 SEMG1P04279 462 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 CYP17A1P05093 508 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 OR4Q2P0C623 313 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 IL1RNP18510 177 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 GPC1P35052 558 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms