RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MSCO60682 206 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 LATS1O95835 1130 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 CCND3P30281 292 aaPredicted RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 RPS3AP61247 264 aaKnown RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 GID4Q8IVV7 300 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 SLC15A3Q8IY34 581 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 FBXO15Q8NCQ5 510 aaPredicted RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 GPR152Q8TDT2 470 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 TTPALQ9BTX7 342 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 MS4A12Q9NXJ0 267 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 IFT52Q9Y366 437 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 TRBC2A0A5B9 178 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 STBD1O95210 358 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 IFNA17P01571 189 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 SFTPBP07988 381 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 PORP16435 677 aaPredicted RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 FXYD6P3P58550 94 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 TAF10Q12962 218 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 RAB39AQ14964 217 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 MEDAGQ5VYS4 303 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 NINJ1Q92982 152 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 PNPLA2Q96AD5 504 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 MKS1Q9NXB0 559 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 EVLQ9UI08 416 aaPredicted RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF16P17020 682 aaPredicted RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 LRRC37A5PQ49AS3 106 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 PIGGQ5H8A4 983 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 FNDC8Q8TC99 324 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 CYP2S1Q96SQ9 504 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 P2RX7Q99572 595 aaKnown RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 ZCCHC3Q9NUD5 404 aaKnown RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 COL20A1Q9P218 1284 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 ADAMTS13Q76LX8 1427 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 GRID2O43424 1007 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 CREBL2O60519 120 aaPredicted RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 GABRR2P28476 465 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 KATNBL1Q9H079 304 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 SRMSQ9H3Y6 488 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 FOLH1BQ9HBA9 442 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 HMX1Q9NP08 348 aaPredicted RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 MGAT4CQ9UBM8 478 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 CD84Q9UIB8 345 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 IQGAP1P46940 1657 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 GTF2F2P13984 249 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 TCEA1P23193 301 aaKnown RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 UBXN11Q5T124 520 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 GPAT4Q86UL3 456 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF584Q8IVC4 421 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF675Q8TD23 568 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ARMC5Q96C12 935 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 PAQR5Q9NXK6 330 aaPredicted RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 SRRDQ9UH36 339 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 TNFRSF10BO14763 440 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ITM2AO43736 263 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 MT-CYBP00156 380 aaPredicted RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 SPATA31C1P0DKV0 1188 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 DNAJB1P25685 340 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 MAP2K3P46734 347 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 RGS6P49758 472 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ENTPD1P49961 510 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 HSD17B14Q9BPX1 270 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 CAPN14A8MX76 684 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 SPATA31C2B4DYI2 1134 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 SLC16A8O95907 504 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 NUDT7P0C024 238 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 CAPN3P20807 821 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 GPR68Q15743 365 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 LRRC66Q68CR7 880 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ACBD4Q8NC06 268 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 OR7G2Q8NG99 324 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 LIN37Q96GY3 246 aaPredicted RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 C7orf34Q96L11 122 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ALPK1Q96QP1 1244 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ORAI3Q9BRQ5 295 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 IDI2Q9BXS1 227 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 VNN3Q9NY84 501 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 PTPRJQ12913 1337 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 MAFKO60675 156 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 BCHEP06276 602 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 H2AFB2P0C5Z0 115 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 DGKGP49619 791 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 MEP1AQ16819 746 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 CCDC58Q4VC31 144 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 OR4C15Q8NGM1 316 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM41AQ96HV5 264 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 SPATA31A1Q5TZJ5 1347 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 A0A1W2PP18 115 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 CREG1O75629 220 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 PENKP01210 267 aaPredicted RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 TAS2R39P59534 338 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM220Q6QAJ8 160 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 KAZALD1Q96I82 304 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 EXTL2Q9UBQ6 330 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 PCDHGA8Q9Y5G5 932 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 SAP18O00422 153 aaKnown RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 RNASEH2AO75792 299 aaKnown RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 CTNNB1P35222 781 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM69Q5SWH9 247 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms