RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 NIPSNAP2O75323 286 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 SLC16A8O95907 504 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 OGNP20774 298 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 IL10P22301 178 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 NMBRP28336 390 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 TAS2R50P59544 299 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 RPS15AP62244 130 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 CRADDP78560 199 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 TAP2Q03519 686 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 OR1C1Q15619 314 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 THEMIS2Q5TEJ8 643 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 CEP97Q8IW35 865 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 LGI4Q8N135 537 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 GHDCQ8N2G8 530 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 ACRBPQ8NEB7 543 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 OR9A4Q8NGU2 314 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 PHF10Q8WUB8 498 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 SCMH1Q96GD3 660 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 PKP4Q99569 1192 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 KIFC1Q9BW19 673 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 MMP25Q9NPA2 562 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 TMEM184CQ9NVA4 438 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 TSR3Q9UJK0 312 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 KCNE1BA0A087WTH5 132 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 FANCGO15287 622 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 P2RX6O15547 441 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 ENO3P13929 434 aaPredicted RBP13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 ABOP16442 354 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 PAMP19021 973 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 XCR1P46094 333 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 MAT1AQ00266 395 aaKnown RBP13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 ACSBG2Q5FVE4 666 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 LANCL3Q6ZV70 420 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 ANKRD37Q7Z713 158 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 CDH24Q86UP0 819 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 SLC13A5Q86YT5 568 aaPredicted RBP13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 OR51Q1Q8NH59 317 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 ZNF480Q8WV37 535 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 C1orf54Q8WWF1 131 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 TSGA10Q9BZW7 698 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 PCBD2Q9H0N5 130 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 SYNPO2LQ9H987 977 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 KLHL1Q9NR64 748 aa13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 INTS10Q9NVR2 710 aaKnown RBP13.94□□□□□ -0.18
CCDC88B-201ENST00000301897 NPIPA5E9PKD4 350 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 E9PLN8 166 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 PRRG2O14669 202 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 ASNA1O43681 348 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 ZBTB14O43829 449 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 TSPAN12O95859 305 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 ETS1P14921 441 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 ARNTP27540 789 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 RPL22P35268 128 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 CD96P40200 585 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 BCL6P41182 706 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 EFNA3P52797 238 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 BASP1P80723 227 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 SRSF11Q05519 484 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 ACTN3Q08043 901 aaPredicted RBP13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 SNX1Q13596 522 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 TESK1Q15569 626 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 KIAA0930Q6ICG6 404 aaPredicted RBP13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 CRLF3Q8IUI8 442 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 REXO1L1PQ8IX06 675 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 RNF10Q8N5U6 811 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 CAMKVQ8NCB2 501 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 ASB11Q8WXH4 323 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 FAM136AQ96C01 138 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 MFSD3Q96ES6 412 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 FRMD6Q96NE9 622 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 SIGLEC12Q96PQ1 595 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 OR1F2PQ96R84 312 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 LPAR4Q99677 370 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 VKORC1Q9BQB6 163 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 MCCC2Q9HCC0 563 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 ANKHQ9HCJ1 492 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 SOX13Q9UN79 622 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 NPIPA1Q9UND3 350 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 CRYL1Q9Y2S2 319 aa13.93□□□□□ -0.18
CCDC88B-201ENST00000301897 SCN3AQ9NY46 2000 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 IGHV3-20A0A0C4DH32 117 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 GABRR3A8MPY1 467 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 H7BY64 318 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 SYF2O95926 243 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 SP1P08047 785 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 MPC1LP0DKB6 136 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 SKIV2L2P42285 1042 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 KIR3DL1P43629 444 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 ZNF75DP51815 510 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 SKP1P63208 163 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 OC90Q02509 493 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 ABRAXAS2Q15018 415 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 NSDHLQ15738 373 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 KRTAP21-3Q3LHN1 58 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 FCRLBQ6BAA4 426 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 TMEM214Q6NUQ4 689 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 DRICH1Q6PGQ1 229 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 PAPD4Q6PIY7 484 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 CILP2Q8IUL8 1156 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 SIAH3Q8IW03 269 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms