RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 OVCA2Q8WZ82 227 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 SLCO2A1Q92959 643 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 TAMM41Q96BW9 452 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 CNDP2Q96KP4 475 aaKnown RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 XKR8Q9H6D3 395 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 SNED1Q8TER0 1413 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 LOC100509620A0A075B734 347 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 SLC22A2O15244 555 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 PRH1P02810 166 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 HAPLN1P10915 354 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 OR1E2P47887 323 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 RASGEF1BQ0VAM2 473 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 UAP1L1Q3KQV9 507 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 NADK2Q4G0N4 442 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 DNAJA4Q8WW22 397 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 CAMK1GQ96NX5 476 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 TM9SF2Q99805 663 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 ZIM2Q9NZV7 527 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 SDK1Q7Z5N4 2213 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 MYO9BQ13459 2157 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 A0A1B0GVT2 93 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 A0A1W2PQ45 241 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 A0A1W2PQY0 241 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 C5orf51A6NDU8 294 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 ORC5O43913 435 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 ATP5A1P25705 553 aaKnown RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 STK19P49842 368 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 CDKL1Q00532 357 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 SEMA3AQ14563 771 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 PCLAFQ15004 111 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 SLC35F1Q5T1Q4 408 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 HMGN2P46Q86SG4 172 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 AMIGO3Q86WK7 504 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 CMTR2Q8IYT2 770 aaKnown RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 PHOSPHO1Q8TCT1 267 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 TLR9Q9NR96 1032 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 TNFRSF10DQ9UBN6 386 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 A0A1W2PRQ8 180 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 ACOX3O15254 700 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 CDC123O75794 336 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 PAK4O96013 591 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 RPS3AP61247 264 aaKnown RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 ZNF572Q7Z3I7 529 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 DNAJB8Q8NHS0 232 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 THEM6Q8WUY1 208 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 JPH3Q8WXH2 748 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 SH3YL1Q96HL8 342 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 HSH2DQ96JZ2 352 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 C17orf62Q9BQA9 187 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 KLRF1Q9NZS2 232 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 EIF3KQ9UBQ5 218 aaKnown RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 H7BY64 318 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 SNAI1O95863 264 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 MLLT10P55197 1068 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 EPGNQ6UW88 154 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 BIRC7Q96CA5 298 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 SIGLEC10Q96LC7 697 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 PRAP1Q96NZ9 151 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 NDC1Q9BTX1 674 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 DLGAP4Q9Y2H0 992 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 H3BSA7 217 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 SCDO00767 359 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 CREG1O75629 220 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 TRAPPC6AO75865 159 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 TSPAN9O75954 239 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 BEST1O76090 585 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 F2P00734 622 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 POLR2CP19387 275 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 MLLT1Q03111 559 aaPredicted RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 TSTQ16762 297 aaKnown RBP11.13□□□□□ -0.63
USP53-201ENST00000274030 C4orf46Q504U0 113 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 ARHGAP40Q5TG30 622 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 CEP97Q8IW35 865 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 TMEM156Q8N614 296 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 SLC5A11Q8WWX8 675 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 PIK3R3Q92569 461 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 GABRQQ9UN88 632 aa11.13□□□□□ -0.63
USP53-201ENST00000274030 PRAMEF11O60813 436 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 HMGN1P05114 100 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 MAN2A2P49641 1150 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 DIO3P55073 304 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 SERINC3Q13530 473 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 ZNF234Q14588 700 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 HERC3Q15034 1050 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 ZNF776Q68DI1 518 aaPredicted RBP11.12□□□□□ -0.63
USP53-201ENST00000274030 C1orf94Q6P1W5 598 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 SLC29A4Q7RTT9 530 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 RNF130Q86XS8 419 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 FOXRED2Q8IWF2 684 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 YIPF7Q8N8F6 280 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 ZNF527Q8NB42 609 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 OR52E4Q8NGH9 312 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 LRRC15Q8TF66 581 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 AURKBQ96GD4 344 aaPredicted RBP11.12□□□□□ -0.63
USP53-201ENST00000274030 FBXL20Q96IG2 436 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 TMEM175Q9BSA9 504 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 LOC100130705A0A1B0GUX0 176 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 PCP4L1A6NKN8 68 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 NDUFS1P28331 727 aa11.12□□□□□ -0.63
USP53-201ENST00000274030 PRMT2P55345 433 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms