RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CAMKVQ8NCB2 501 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ANKK1Q8NFD2 765 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC13A3Q8WWT9 602 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 MAELQ96JY0 434 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 RTCAO00442 366 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 CDRT1O95170 752 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC39A4Q6P5W5 647 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 PHF13Q86YI8 300 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 OR6N1Q8NGY5 312 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 TGM7Q96PF1 710 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 OSBPL7Q9BZF2 842 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SEMA6CQ9H3T2 930 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 FAM86C1Q9NVL1 165 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 HIF1ANQ9NWT6 349 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 TP53TG5Q9Y2B4 290 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 MRPL42Q9Y6G3 142 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 CRB1P82279 1406 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SALL1Q9NSC2 1324 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 GPR68Q15743 365 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SH3PXD2AQ5TCZ1 1133 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 TSEN2Q8NCE0 465 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 C20orf202A1L168 122 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 BMP6P22004 513 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 FSTL1Q12841 308 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 MAP4K3Q8IVH8 894 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 RTFDC1Q9BY42 306 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 METTL7AQ9H8H3 244 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ACTR3BQ9P1U1 418 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 CYP8B1Q9UNU6 501 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 NEO1Q92859 1461 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 LOC100130705A0A1B0GUX0 176 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ANKRD34BA5PLL1 514 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 MEN1O00255 615 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SULT1C2O00338 296 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 EPHX2P34913 555 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ERVK-16P61578 105 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SP3Q02447 781 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 TEX44Q53QW1 395 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 FTCDNL1E5RQL4 147 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 ALOX15BO15296 676 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 PRPS1L1P21108 318 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 PRKAR1BP31321 381 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 GALK2Q01415 458 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 GSTM4Q03013 218 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 SSX2Q16385 188 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 NUDT13Q86X67 352 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 GLOD4Q9HC38 313 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 SLCO1B3Q9NPD5 702 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 PAK1IP1Q9NWT1 392 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 ZNF850A8MQ14 1090 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 SMAD9O15198 467 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 MELKQ14680 651 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 KCNIP4Q6PIL6 250 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 POU2F3Q9UKI9 436 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 EXOSC1Q9Y3B2 195 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 PCDHB14Q9Y5E9 798 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 DNAJB6O75190 326 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 POP4O95707 220 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 DSTNP60981 165 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 MAB21L3Q8N8X9 362 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 KCT2Q8NC54 265 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 ARL11Q969Q4 196 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 UBXN10Q96LJ8 280 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 WRAP53Q9BUR4 548 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 RNF215Q9Y6U7 377 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 ADCY10Q96PN6 1610 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 PROM1O43490 865 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 EPHX1P07099 455 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 OR8U9P0C7N5 309 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 RPL13AP40429 203 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 FAM71AQ8IYT1 594 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 CSPG4P5Q96PW8 444 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 RBP7Q96R05 134 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 BARD1Q99728 777 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 COQ10BQ9H8M1 238 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 PRPH2P23942 346 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 LYSMD3Q7Z3D4 306 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 NAXEQ8NCW5 288 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 RCBTB1Q8NDN9 531 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 FAM46DQ8NEK8 389 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 HOXB13Q92826 284 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 CYP2S1Q96SQ9 504 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 ARHGAP9Q9BRR9 750 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 DNAJB4Q9UDY4 337 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 UBE2J1Q9Y385 318 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 CXCL11O14625 94 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 OIP5O43482 229 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 MOGSQ13724 837 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 ATXN7L3Q14CW9 347 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 DAZAP1Q96EP5 407 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC6A16Q9GZN6 736 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 PDHXO00330 501 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 RNF13O43567 381 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 TAS2R20P59543 309 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 RPS14P62263 151 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 CLEC6AQ6EIG7 209 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 VSTM1Q6UX27 236 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 BTBD2Q9BX70 525 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 FRKP42685 505 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms