RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TLE2Q04725 743 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 AGTRAPQ6RW13 159 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 KLHL17Q6TDP4 642 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 OR9Q2Q8NGE9 314 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 ING5Q8WYH8 240 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 RERGLQ9H628 205 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 SCN3BQ9NY72 215 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 C5AR2Q9P296 337 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 SPASTQ9UBP0 616 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 ERGIC3Q9Y282 383 aa20.58■□□□□ 0.88
TRIM28-201ENST00000253024 XPAP23025 273 aaPredicted RBP20.57■□□□□ 0.88
TRIM28-201ENST00000253024 MAGEA10P43363 369 aaPredicted RBP20.57■□□□□ 0.88
TRIM28-201ENST00000253024 CRYBA2P53672 197 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 C11orf74Q86VG3 221 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 SLC43A3Q8NBI5 491 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 OR4A15Q8NGL6 344 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 FEVQ99581 238 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 SNX8Q9Y5X2 465 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 CFAP20Q9Y6A4 193 aaKnown RBP20.57■□□□□ 0.88
TRIM28-201ENST00000253024 WNT6Q9Y6F9 365 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 CLDN25C9JDP6 229 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 ADAM23O75077 832 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 BMP4P12644 408 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 CLK1P49759 484 aaKnown RBP20.57■□□□□ 0.88
TRIM28-201ENST00000253024 MPPE1Q53F39 396 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 ZNF385BQ569K4 471 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 P3H2Q8IVL5 708 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 HUS1BQ8NHY5 278 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 MAGED4Q96JG8 741 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 IL17FQ96PD4 163 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 SLC29A3Q9BZD2 475 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 GPN2Q9H9Y4 310 aaPredicted RBP20.57■□□□□ 0.88
TRIM28-201ENST00000253024 USE1Q9NZ43 259 aa20.57■□□□□ 0.88
TRIM28-201ENST00000253024 GRXCR2A6NFK2 248 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 SOCS5O75159 536 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 DNTTP04053 509 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 RECQLP46063 649 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-201ENST00000253024 CSNK1DP48730 415 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 CPTPQ5TA50 214 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 PLD3Q8IV08 490 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 TERB1Q8NA31 727 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 NEIL2Q969S2 332 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 OTUB1Q96FW1 271 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-201ENST00000253024 TRIT1Q9H3H1 467 aaKnown RBP20.56■□□□□ 0.88
TRIM28-201ENST00000253024 RDH14Q9HBH5 336 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 RGS10O43665 173 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 UGT2B11O75310 529 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 C8AP07357 584 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 SLC6A12P48065 614 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 LRRC74AQ0VAA2 488 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 CAMK2GQ13555 558 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-201ENST00000253024 TCEA2Q15560 299 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 TRIM60Q495X7 471 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 LRRC70Q7Z2Q7 622 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 SZRD1Q7Z422 152 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 RAVER1Q8IY67 606 aaKnown RBP20.56■□□□□ 0.88
TRIM28-201ENST00000253024 TMEM159Q96B96 161 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 GPR83Q9NYM4 423 aa20.56■□□□□ 0.88
TRIM28-201ENST00000253024 ZSCAN9O15535 394 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-201ENST00000253024 EIF2B2P49770 351 aaKnown RBP20.55■□□□□ 0.88
TRIM28-201ENST00000253024 ACOX1Q15067 660 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 TMEM215Q68D42 235 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 TCF25Q9BQ70 676 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 WDR70Q9NW82 654 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 CAB39Q9Y376 341 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-201ENST00000253024 KRBA1A5PL33 1030 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 KPNA5O15131 536 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 SCN2BO60939 215 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 C6orf47O95873 294 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 CHRM5P08912 532 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-201ENST00000253024 PRPS1L1P21108 318 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 DNAJA1P31689 397 aaKnown RBP20.55■□□□□ 0.88
TRIM28-201ENST00000253024 LIPAP38571 399 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 SLC35A2P78381 396 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 EPS8Q12929 822 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 NPRL3Q12980 569 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 COLEC12Q5KU26 742 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 PLPP6Q8IY26 295 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 FIBINQ8TAL6 211 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 UBTD2Q8WUN7 234 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 TRUB1Q8WWH5 349 aaKnown RBP20.55■□□□□ 0.88
TRIM28-201ENST00000253024 PRUNE2Q8WUY3 3088 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 KPNA3O00505 521 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-201ENST00000253024 JUPP14923 745 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 HNF4AP41235 474 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 MAD2L1BPQ15013 274 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-201ENST00000253024 KDM4DQ6B0I6 523 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 TMEM220Q6QAJ8 160 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 ZNF783Q6ZMS7 281 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 OLIG3Q7RTU3 272 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 CFAP206Q8IYR0 622 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 SLC5A8Q8N695 610 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 NIPSNAP1Q9BPW8 284 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 SLC25A13Q9UJS0 675 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 ZNF229Q9UJW7 825 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 TPRKBQ9Y3C4 175 aa20.55■□□□□ 0.88
TRIM28-201ENST00000253024 K7ESM1 405 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 RFXAPO00287 272 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 SUV39H1O43463 412 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 WBP4O75554 376 aaKnown RBP20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms