RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 CNTN3Q9P232 1028 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 CFAP97Q9P2B7 532 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 A0A1W2PQH9 124 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 F8W036 122 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 CLIC1O00299 241 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 TLX2O43763 284 aaPredicted RBP10.16□□□□□ -0.78
VCL-201ENST00000211998 DFNA5O60443 496 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 FLT3LGP49771 235 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 BLOC1S1P78537 153 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 KLHL26Q53HC5 615 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 LIPKQ5VXJ0 399 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 SLC30A6Q6NXT4 461 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 CEP97Q8IW35 865 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 DTX3Q8N9I9 347 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 DENND1AQ8TEH3 1009 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 AP2M1Q96CW1 435 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 HAPLN3Q96S86 360 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 TLE6Q9H808 572 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 MIOSQ9NXC5 875 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 HMX3A6NHT5 357 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 OIP5O43482 229 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 ITGA10O75578 1167 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 SORBS2O94875 1100 aaKnown RBP10.16□□□□□ -0.78
VCL-201ENST00000211998 NFATC1O95644 943 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 MT-CYBP00156 380 aaPredicted RBP10.16□□□□□ -0.78
VCL-201ENST00000211998 CKMT1AP12532 417 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 ZNF35P13682 527 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 PGAM2P15259 253 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 NTRK2Q16620 822 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 KANK2Q63ZY3 851 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 C17orf64Q86WR6 236 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 ZBTB2Q8N680 514 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.16□□□□□ -0.78
VCL-201ENST00000211998 AQP11Q8NBQ7 271 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 CHPT1Q8WUD6 406 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 NCSTNQ92542 709 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 HSH2DQ96JZ2 352 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 NTN4Q9HB63 628 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 ACTR10Q9NZ32 417 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 PCDHA2Q9Y5H9 948 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 GMDSO60547 372 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 LDOC1O95751 146 aaPredicted RBP10.16□□□□□ -0.78
VCL-201ENST00000211998 SCGB1D2O95969 90 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 GOT2P00505 430 aaKnown RBP10.16□□□□□ -0.78
VCL-201ENST00000211998 ZBTB48P10074 688 aaPredicted RBP10.16□□□□□ -0.78
VCL-201ENST00000211998 LAMP2P13473 410 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 CTBP2P56545 445 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 DEFA6Q01524 100 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 CERS6Q6ZMG9 384 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 PHYKPLQ8IUZ5 450 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 CPNE9Q8IYJ1 553 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 ADGRG2Q8IZP9 1017 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 SIDT2Q8NBJ9 832 aaKnown RBP10.16□□□□□ -0.78
VCL-201ENST00000211998 MFSD8Q8NHS3 518 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 NEK7Q8TDX7 302 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 TMEM27Q9HBJ8 222 aa10.16□□□□□ -0.78
VCL-201ENST00000211998 ZNF214Q9UL59 606 aaPredicted RBP10.16□□□□□ -0.78
VCL-201ENST00000211998 ANKRD34BA5PLL1 514 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 IQCF5A8MTL0 148 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 GTPBP1O00178 669 aaKnown RBP10.15□□□□□ -0.78
VCL-201ENST00000211998 SYN3O14994 580 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 ATG13O75143 517 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 GATBO75879 557 aaKnown RBP10.15□□□□□ -0.78
VCL-201ENST00000211998 ZNF132P52740 706 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 E2F1Q01094 437 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 TAF10Q12962 218 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 COL28A1Q2UY09 1125 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 POM121L1PQ3SYA9 428 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 Q6ZNX1 250 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 TMPRSS11BQ86T26 416 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 TMEM192Q8IY95 271 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 ALPK1Q96QP1 1244 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 AIF1LQ9BQI0 150 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 DUSP26Q9BV47 211 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 ACTR6Q9GZN1 396 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 ZNF282Q9UDV7 671 aaPredicted RBP10.15□□□□□ -0.78
VCL-201ENST00000211998 FZD4Q9ULV1 537 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 GLYATL1P3A0A0U1RQE8 302 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 MCIDASD6RGH6 385 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 NEDD8-MDP1E9PL57 170 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 PSMD9O00233 223 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 RAB36O95755 333 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 OR3A3P47888 321 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 OR3A2P47893 321 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 ILF3Q12906 894 aaKnown RBP eCLIP10.15□□□□□ -0.782e-7■□□□□ 8.1
VCL-201ENST00000211998 LARS2Q15031 903 aaKnown RBP10.15□□□□□ -0.78
VCL-201ENST00000211998 IFNL1Q8IU54 200 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 SNIP1Q8TAD8 396 aaKnown RBP10.15□□□□□ -0.78
VCL-201ENST00000211998 BCL7BQ9BQE9 202 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 CENPOQ9BU64 300 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 FBRSL1Q9HCM7 1045 aaKnown RBP10.15□□□□□ -0.78
VCL-201ENST00000211998 TVP23AA6NH52 213 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 PAK4O96013 591 aaPredicted RBP10.15□□□□□ -0.78
VCL-201ENST00000211998 GJB1P08034 283 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 GM2AP17900 193 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 GNALP38405 381 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 ATAD3CQ5T2N8 411 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 BCL2L15Q5TBC7 163 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 LBX2Q6XYB7 198 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 FAM46DQ8NEK8 389 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms