RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SLC34A1Q06495 639 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CXorf57Q6NSI4 855 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 EEF1AKMT1Q8WVE0 214 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ASB15Q8WXK1 588 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 COA7Q96BR5 231 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF274Q96GC6 653 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SLITRK1Q96PX8 696 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZFYVE21Q9BQ24 234 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ASF1BQ9NVP2 202 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 XPR1Q9UBH6 696 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NAGPAQ9UK23 515 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PADI1Q9ULC6 663 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 KCNH3Q9ULD8 1083 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SNX12Q9UMY4 172 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SLC35F4A4IF30 521 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 OR6C76A6NM76 312 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GSG1L2A8MUP6 293 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MDM4O15151 490 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CSDE1O75534 798 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RPS6KA4O75676 772 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NDUFA10O95299 355 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CHRNA1P02708 482 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 C4BPAP04003 597 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FAM58BPP0C7Q3 252 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GNSP15586 552 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 EPHB2P29323 1055 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 LTBRP36941 435 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SLC11A1P49279 550 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SRSF2Q01130 221 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SLC39A12Q504Y0 691 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 DCAF6Q58WW2 860 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 DCST2Q5T1A1 773 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ABLIM2Q6H8Q1 611 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ARPINQ7Z6K5 226 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 EMC1Q8N766 993 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 COLGALT1Q8NBJ5 622 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 OR5M1Q8NGP8 315 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RNF170Q96K19 258 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 KLHL5Q96PQ7 755 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 LRRC37BQ96QE4 947 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RANBP9Q96S59 729 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 DCLRE1BQ9H816 532 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CACNG4Q9UBN1 327 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NCANO14594 1321 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF850A8MQ14 1090 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 EEF2KO00418 725 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SCDO00767 359 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CYP7B1O75881 506 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ACAA1P09110 424 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 G6PDP11413 515 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FBLP22087 321 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 OMGP23515 440 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GRPRP30550 384 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GALCP54803 685 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF763Q0D2J5 394 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SCGB2B2Q4G0G5 96 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 YIF1BQ5BJH7 314 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SAMD13Q5VXD3 122 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 DTHD1Q6ZMT9 781 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TRMT1LQ7Z2T5 733 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ANKRD46Q86W74 232 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 LSMEM2Q8N112 164 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CELF5Q8N6W0 485 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TERB2Q8NHR7 220 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 IFI44Q8TCB0 444 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 BPIFA2Q96DR5 249 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GLT1D1Q96MS3 346 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 C7orf26Q96N11 449 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CPPED1Q9BRF8 314 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 BCO1Q9HAY6 547 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF160Q9HCG1 818 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TRAFD1O14545 582 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ARPC3O15145 178 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ADAM23O75077 832 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PTP4A3O75365 173 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SEC24AO95486 1093 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RAB5CP51148 216 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SOX10P56693 466 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CSHL1Q14406 222 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 OR8G1Q15617 311 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 TRIP4Q15650 581 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ESCO2Q56NI9 601 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 FGD3Q5JSP0 725 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 DCST1Q5T197 706 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 DPY19L4Q7Z388 723 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RTN4RL2Q86UN3 420 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ADGRG2Q8IZP9 1017 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 MFSD9Q8NBP5 474 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 HM13Q8TCT9 377 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 KAT5Q92993 513 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 OPALINQ96PE5 141 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SLC9A2Q9UBY0 812 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PEX16Q9Y5Y5 336 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 XKRY2A2RUG3 117 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 FAM205CA6NFA0 338 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 POTEMA6NI47 508 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 LPOP22079 712 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 IGFBP5P24593 272 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ITGA1P56199 1179 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms