RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 RTKNQ9BST9 563 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 C1orf21Q9H246 121 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 ZSCAN32Q9NX65 697 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 ZIM2Q9NZV7 527 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 ADGRE2Q9UHX3 823 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 CSNK1G3Q9Y6M4 447 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 OR6C74A6NCV1 312 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 ANKRD28O15084 1053 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 ETHE1O95571 254 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 AVPR2P30518 371 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 SERPINB1P30740 379 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 MAZP56270 477 aaKnown RBP17.69■□□□□ 0.42
CLN3-254ENST00000637050 NME5P56597 212 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 PHEXP78562 749 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 DEFB133Q30KQ1 61 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 KIAA1614Q5VZ46 1190 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 CEP68Q76N32 757 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 VN1R5Q7Z5H4 357 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 SYT12Q8IV01 421 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 FAM20CQ8IXL6 584 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.69■□□□□ 0.42
CLN3-254ENST00000637050 ARL14Q8N4G2 192 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 ANKRD53Q8N9V6 530 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 ZBTB44Q8NCP5 570 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 RBM15BQ8NDT2 890 aaKnown RBP17.69■□□□□ 0.42
CLN3-254ENST00000637050 FBXO27Q8NI29 283 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 C11orf24Q96F05 449 aaPredicted RBP17.69■□□□□ 0.42
CLN3-254ENST00000637050 OR2A14Q96R47 310 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 ELF4Q99607 663 aaPredicted RBP17.69■□□□□ 0.42
CLN3-254ENST00000637050 DPH7Q9BTV6 452 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 UCK1Q9HA47 277 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 ENTPD2Q9Y5L3 495 aa17.69■□□□□ 0.42
CLN3-254ENST00000637050 TRBC2A0A5B9 178 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 SNRPB2P08579 225 aaKnown RBP17.68■□□□□ 0.42
CLN3-254ENST00000637050 SP9P0CG40 484 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 EZRP15311 586 aaKnown RBP17.68■□□□□ 0.42
CLN3-254ENST00000637050 POLR2CP19387 275 aaPredicted RBP17.68■□□□□ 0.42
CLN3-254ENST00000637050 ZFP36L2P47974 494 aaKnown RBP17.68■□□□□ 0.42
CLN3-254ENST00000637050 UFM1P61960 85 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 RBBP5Q15291 538 aaKnown RBP17.68■□□□□ 0.42
CLN3-254ENST00000637050 SHBQ15464 509 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 CACHD1Q5VU97 1274 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 ZNF425Q6IV72 752 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 KIF2BQ8N4N8 673 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 PROKR1Q8TCW9 393 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 PIGKQ92643 395 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 TEX37Q96LM6 180 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 SLC25A23Q9BV35 468 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 SARGQ9BW04 601 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 ACTL8Q9H568 366 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.68■□□□□ 0.42
CLN3-254ENST00000637050 ACTR10Q9NZ32 417 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 SNX7Q9UNH6 387 aa17.68■□□□□ 0.42
CLN3-254ENST00000637050 FEZF1A0PJY2 475 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 PPM1DO15297 605 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 SLC22A3O75751 556 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 BCKDHAP12694 445 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 PCSK2P16519 638 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 UGT2B7P16662 529 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 MAPK1P28482 360 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 HOXD12P35452 270 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 CPOXP36551 454 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 TBL3Q12788 808 aaKnown RBP17.67■□□□□ 0.42
CLN3-254ENST00000637050 BLOC1S3Q6QNY0 202 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 ADCK2Q7Z695 626 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 LIX1Q8N485 282 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 GPR156Q8NFN8 814 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 OR10G6Q8NH81 332 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 CHTF18Q8WVB6 975 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 APOLD1Q96LR9 279 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 SERPINI1Q99574 410 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 TBC1D10AQ9BXI6 508 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 NMRK1Q9NWW6 199 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 DLGAP4Q9Y2H0 992 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 CFAP73A6NFT4 308 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 ANKDD1BA6NHY2 528 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 C2orf74A8MZ97 194 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 GYG2O15488 501 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 LCMT2O60294 686 aaKnown RBP17.67■□□□□ 0.42
CLN3-254ENST00000637050 FKBP9O95302 570 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 TGFB1P01137 390 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 PRPS2P11908 318 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 JAK1P23458 1154 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 PTX3P26022 381 aaPredicted RBP17.67■□□□□ 0.42
CLN3-254ENST00000637050 GRIA3P42263 894 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 ARRB1P49407 418 aaPredicted RBP17.67■□□□□ 0.42
CLN3-254ENST00000637050 BNIP3Q12983 259 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 STX5Q13190 355 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 NOXRED1Q6NXP6 359 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 ZNF761Q86XN6 746 aaPredicted RBP17.67■□□□□ 0.42
CLN3-254ENST00000637050 SLC25A45Q8N413 288 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 TSPEARQ8WU66 669 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 SLC45A3Q96JT2 553 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 MRPL1Q9BYD6 325 aaKnown RBP17.67■□□□□ 0.42
CLN3-254ENST00000637050 SLC52A3Q9NQ40 469 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 SIRT5Q9NXA8 310 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 RUVBL1Q9Y265 456 aaKnown RBP17.67■□□□□ 0.42
CLN3-254ENST00000637050 MUC3AQ02505 3323 aa17.67■□□□□ 0.42
CLN3-254ENST00000637050 GSAPA4D1B5 854 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 OR5K3A6NET4 321 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms