RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GSAPA4D1B5 854 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 LMO7DNF2Z398 122 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 AIM2O14862 343 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 PRAMEF10O60809 474 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 PTPN4P29074 926 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 AVPR2P30518 371 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 GRIA3P42263 894 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 COL9A2Q14055 689 aaPredicted RBP19.3■□□□□ 0.68
CLN3-250ENST00000636839 TEAD4Q15561 434 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 HIST2H2ACQ16777 129 aaPredicted RBP19.3■□□□□ 0.68
CLN3-250ENST00000636839 ZNF423Q2M1K9 1284 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 HIST2H2AA3Q6FI13 130 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 SLC9B2Q86UD5 537 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 PROKR1Q8TCW9 393 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 UTP4Q969X6 686 aaKnown RBP19.3■□□□□ 0.68
CLN3-250ENST00000636839 RCN3Q96D15 328 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 MACROD1Q9BQ69 325 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 DMRT3Q9NQL9 472 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 FBXO4Q9UKT5 387 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 CABIN1Q9Y6J0 2220 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 SERTM1A2A2V5 107 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 PATE3B3GLJ2 98 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 FBP2O00757 339 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 ANKRD28O15084 1053 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 OR1F1O43749 312 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 THRAP10827 490 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 BCKDHAP12694 445 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 AMD1P17707 334 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 ADSLP30566 484 aaPredicted RBP19.3■□□□□ 0.68
CLN3-250ENST00000636839 CPOXP36551 454 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 CORO7P57737 925 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 REEP5Q00765 189 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 CSTF3Q12996 717 aaKnown RBP19.3■□□□□ 0.68
CLN3-250ENST00000636839 CUL3Q13618 768 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 RP9Q8TA86 221 aaKnown RBP19.3■□□□□ 0.68
CLN3-250ENST00000636839 CMTM7Q96FZ5 175 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 AIF1LQ9BQI0 150 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 NOP53Q9NZM5 478 aaKnown RBP19.3■□□□□ 0.68
CLN3-250ENST00000636839 TMEM131Q92545 1883 aa19.3■□□□□ 0.68
CLN3-250ENST00000636839 PI4KAP42356 2102 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 NR5A2O00482 541 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 HAT1O14929 419 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 SLC22A2O15244 555 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 KDM1AO60341 852 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 SP9P0CG40 484 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 GNSP15586 552 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 UGT2B7P16662 529 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 PRDX6P30041 224 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 LSSP48449 732 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 MXRA7P84157 204 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 TBL3Q12788 808 aaKnown RBP19.29■□□□□ 0.68
CLN3-250ENST00000636839 LAPTM5Q13571 262 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 VPS26BQ4G0F5 336 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 KRT78Q8N1N4 520 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 KRTCAP2Q8N6L1 136 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 RSC1A1Q92681 617 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 EGLN2Q96KS0 407 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 FCRL4Q96PJ5 515 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 BTBD10Q9BSF8 475 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 CADM1Q9BY67 442 aaKnown RBP19.29■□□□□ 0.68
CLN3-250ENST00000636839 IL21RQ9HBE5 538 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 HRASLS2Q9NWW9 162 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 ACTR10Q9NZ32 417 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 TP53BP1Q12888 1972 aaPredicted RBP19.29■□□□□ 0.68
CLN3-250ENST00000636839 GYG2O15488 501 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 SLC22A3O75751 556 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 DNAJC8O75937 253 aaPredicted RBP19.29■□□□□ 0.68
CLN3-250ENST00000636839 GBAP04062 536 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 ANXA6P08133 673 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 GIMD1P0DJR0 217 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 CAPN3P20807 821 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 PRPH2P23942 346 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 BCL6P41182 706 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 OR2I1PQ8NGU4 316 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 ZFPM2Q8WW38 1151 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 VPS33AQ96AX1 596 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 REPS1Q96D71 796 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 SORBS1Q9BX66 1292 aaKnown RBP19.29■□□□□ 0.68
CLN3-250ENST00000636839 TWSG1Q9GZX9 223 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 BRF2Q9HAW0 419 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 SLC52A3Q9NQ40 469 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 EVA1BQ9NVM1 165 aa19.29■□□□□ 0.68
CLN3-250ENST00000636839 TNRC6BQ9UPQ9 1833 aaKnown RBP19.28■□□□□ 0.68
CLN3-250ENST00000636839 CACNA1EQ15878 2313 aa19.28■□□□□ 0.68
CLN3-250ENST00000636839 SNRPB2P08579 225 aaKnown RBP19.28■□□□□ 0.68
CLN3-250ENST00000636839 KRT16P08779 473 aa19.28■□□□□ 0.68
CLN3-250ENST00000636839 PVRP15151 417 aa19.28■□□□□ 0.68
CLN3-250ENST00000636839 RAE1P78406 368 aaKnown RBP19.28■□□□□ 0.68
CLN3-250ENST00000636839 ANGPT1Q15389 498 aa19.28■□□□□ 0.68
CLN3-250ENST00000636839 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.28■□□□□ 0.68
CLN3-250ENST00000636839 NOXRED1Q6NXP6 359 aa19.28■□□□□ 0.68
CLN3-250ENST00000636839 GATAD2AQ86YP4 633 aa19.28■□□□□ 0.68
CLN3-250ENST00000636839 C1orf52Q8N6N3 182 aaKnown RBP19.28■□□□□ 0.68
CLN3-250ENST00000636839 ZC3H10Q96K80 434 aaKnown RBP19.28■□□□□ 0.68
CLN3-250ENST00000636839 TSSK3Q96PN8 268 aa19.28■□□□□ 0.68
CLN3-250ENST00000636839 ELF4Q99607 663 aaPredicted RBP19.28■□□□□ 0.68
CLN3-250ENST00000636839 EIF3LQ9Y262 564 aaKnown RBP19.28■□□□□ 0.68
CLN3-250ENST00000636839 FOXE1O00358 373 aaPredicted RBP19.27■□□□□ 0.68
CLN3-250ENST00000636839 CFIP05156 583 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 SDC1P18827 310 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms