RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 C6orf15Q6UXA7 325 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 LCA5Q86VQ0 697 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 CACNA2D3Q8IZS8 1091 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 NLGN4XQ8N0W4 816 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 ESX1Q8N693 406 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 IL22RA1Q8N6P7 574 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 ZNF655Q8N720 491 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 TTC29Q8NA56 475 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 GALNT6Q8NCL4 622 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 NLGN4YQ8NFZ3 816 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 MZB1Q8WU39 189 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 NEIL2Q969S2 332 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 ESAMQ96AP7 390 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 CLIP3Q96DZ5 547 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 MRPL57Q9BQC6 102 aaKnown RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 ROPN1BQ9BZX4 212 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 FAM117AQ9C073 453 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 SPRTNQ9H040 489 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 MRPL46Q9H2W6 279 aaKnown RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 ACTR5Q9H9F9 607 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 ROPN1Q9HAT0 212 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 PTBP2Q9UKA9 531 aaKnown RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 PILRAQ9UKJ1 303 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 PCDHB3Q9Y5E6 796 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 AP1M2Q9Y6Q5 423 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 A0A1W2PPM1 405 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 CCDC151A5D8V7 595 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 ZNF749O43361 778 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 SRPX2O60687 465 aaPredicted RBP17.3■□□□□ 0.36
CLN3-239ENST00000628023 DLGAP3O95886 979 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 GNAZP19086 355 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 GGT5P36269 586 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 RPS15AP62244 130 aaKnown RBP17.3■□□□□ 0.36
CLN3-239ENST00000628023 FRMPD2BQ6IN97 320 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 LRRC70Q7Z2Q7 622 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 VASH2Q86V25 355 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 DTX1Q86Y01 620 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 PLD3Q8IV08 490 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 KLHDC8AQ8IYD2 350 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 CYP4X1Q8N118 509 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 TBC1D19Q8N5T2 526 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 NDC1Q9BTX1 674 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 TXLNGQ9NUQ3 528 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 TMCO1Q9UM00 188 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 SRPK3Q9UPE1 567 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 ANGPTL3Q9Y5C1 460 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 PCDHGA4Q9Y5G9 962 aa17.3■□□□□ 0.36
CLN3-239ENST00000628023 HEATR5BQ9P2D3 2071 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 FOXO6A8MYZ6 492 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 H0YGG7 62 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 MAP2K7O14733 419 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 CLGNO14967 610 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 SLC28A2O43868 658 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 GLRA3O75311 464 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 CTSBP07858 339 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 GSTA1P08263 222 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 HBQ1P09105 142 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 CCNYL3P0C7X3 344 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 MTHFD2P13995 350 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 AGTR2P50052 363 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 ALDH18A1P54886 795 aaKnown RBP17.29■□□□□ 0.36
CLN3-239ENST00000628023 ARF3P61204 181 aaPredicted RBP17.29■□□□□ 0.36
CLN3-239ENST00000628023 CSNK1G2P78368 415 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 MEF2AQ02078 507 aaPredicted RBP17.29■□□□□ 0.36
CLN3-239ENST00000628023 MAP7Q14244 749 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 GRM7Q14831 915 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 PDK4Q16654 411 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 KRT71Q3SY84 523 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 CATSPEREQ5SY80 951 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 CSNK1A1LQ8N752 337 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 UBTD2Q8WUN7 234 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 EXTL1Q92935 676 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 CAPS2Q9BXY5 557 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 CD244Q9BZW8 370 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 PELI2Q9HAT8 420 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 STARD5Q9NSY2 213 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 GPRC5BQ9NZH0 403 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 OPTCQ9UBM4 332 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 SPTBP11277 2137 aa17.29■□□□□ 0.36
CLN3-239ENST00000628023 LOC105369274A0A096LPK9 316 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 LOC102723532A0A0G2JNH3 316 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 FEZF1A0PJY2 475 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 KLK3P07288 261 aaPredicted RBP17.28■□□□□ 0.36
CLN3-239ENST00000628023 ATXN8OSP0DMR3 200 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 TAC1P20366 129 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 RELAQ04206 551 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 NFATC3Q12968 1075 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 SRSF6Q13247 344 aaKnown RBP17.28■□□□□ 0.36
CLN3-239ENST00000628023 SETDB1Q15047 1291 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 WASHC2DQ5SRD0 308 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 FBXO42Q6P3S6 717 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 NXPE4Q6UWF7 544 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 TIPARPQ7Z3E1 657 aaKnown RBP17.28■□□□□ 0.36
CLN3-239ENST00000628023 PRICKLE2Q7Z3G6 844 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 OR4N4Q8N0Y3 316 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 PTGR2Q8N8N7 351 aaPredicted RBP17.28■□□□□ 0.36
CLN3-239ENST00000628023 ABHD11Q8NFV4 315 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 MR1Q95460 341 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 KIAA1143Q96AT1 154 aaPredicted RBP17.28■□□□□ 0.36
CLN3-239ENST00000628023 PHF21BQ96EK2 531 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms