RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TMEM211Q6ICI0 200 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 MFSD12Q6NUT3 480 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 ADGRD2Q7Z7M1 963 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 IQCHQ86VS3 1027 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 GPC2Q8N158 579 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 AVL9Q8NBF6 648 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 RPLP0P6Q8NHW5 317 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 KIAA1524Q8TCG1 905 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 FAM71F1Q96KD3 344 aaPredicted RBP2□□□□□ -2.09
SCN1A-208ENST00000625916 PAFAH2Q99487 392 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 PRRG4Q9BZD6 226 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 OSGEPL1Q9H4B0 414 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 EIF2B3Q9NR50 452 aaKnown RBP2□□□□□ -2.09
SCN1A-208ENST00000625916 SEPT11Q9NVA2 429 aaKnown RBP2□□□□□ -2.09
SCN1A-208ENST00000625916 PSD3Q9NYI0 1048 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 HACD3Q9P035 362 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 ZNF69Q9UC07 566 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 ABT1Q9ULW3 272 aaKnown RBP2□□□□□ -2.09
SCN1A-208ENST00000625916 GTF2A1LQ9UNN4 478 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 WDR83OSQ9Y284 106 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 AUP1Q9Y679 476 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 IGKV6-21A0A0C4DH24 114 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 IGHV3-16A0A0C4DH30 117 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 IPO8O15397 1037 aaKnown RBP1.99□□□□□ -2.09
SCN1A-208ENST00000625916 TXNL1O43396 289 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 ECE2O60344 883 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 MTRF1O75570 445 aaKnown RBP1.99□□□□□ -2.09
SCN1A-208ENST00000625916 RPLP0P05388 317 aaKnown RBP1.99□□□□□ -2.09
SCN1A-208ENST00000625916 QDPRP09417 244 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 DNASE1P24855 282 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 TM4SF1P30408 202 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 MATKP42679 507 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 GSK3BP49841 420 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 VEZF1Q14119 521 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 HSCBQ8IWL3 235 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 RPAP2Q8IXW5 612 aaPredicted RBP1.99□□□□□ -2.09
SCN1A-208ENST00000625916 SMC5Q8IY18 1101 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 TTC39CQ8N584 583 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 NOA1Q8NC60 698 aaKnown RBP1.99□□□□□ -2.09
SCN1A-208ENST00000625916 MCUQ8NE86 351 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 ITLN1Q8WWA0 313 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 ESAMQ96AP7 390 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 NUS1Q96E22 293 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 DGAT2Q96PD7 388 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 SEPHS2Q99611 448 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 DNAI2Q9GZS0 605 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 EGLN3Q9H6Z9 239 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 OLA1Q9NTK5 396 aaKnown RBP1.99□□□□□ -2.09
SCN1A-208ENST00000625916 CUTCQ9NTM9 273 aa1.99□□□□□ -2.09
SCN1A-208ENST00000625916 C9orf78Q9NZ63 289 aaPredicted RBP1.99□□□□□ -2.09
SCN1A-208ENST00000625916 MYH14Q7Z406 1995 aaKnown RBP1.98□□□□□ -2.09
SCN1A-208ENST00000625916 CTDSP2O14595 271 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 ZNF749O43361 778 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 HOXC4P09017 264 aaPredicted RBP1.98□□□□□ -2.09
SCN1A-208ENST00000625916 DANCRP0C864 163 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 MPZP25189 248 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 CD27P26842 260 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 GPR183P32249 361 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 MAN1A1P33908 653 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 HADHAP40939 763 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 CETN2P41208 172 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 CDH13P55290 713 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 OPCMLQ14982 345 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 TMEM44Q2T9K0 475 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 FGD3Q5JSP0 725 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 LINC00242Q5T6M2 205 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 ATP1A1-AS1Q5TC04 95 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 KRT79Q5XKE5 535 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 NAXEQ8NCW5 288 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 IL17REQ8NFR9 667 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 TAAR6Q96RI8 345 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 CDCA3Q99618 268 aaPredicted RBP1.98□□□□□ -2.09
SCN1A-208ENST00000625916 STRADBQ9C0K7 418 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 Q9H8V8 135 aa1.98□□□□□ -2.09
SCN1A-208ENST00000625916 ARID2Q68CP9 1835 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 TRGV8A0A0C4DH27 118 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 OR2A25A4D2G3 310 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 PTGES3LE9PB15 166 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 F8VVB4 439 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 F8VWA3 439 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 CYTIPO60759 359 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 BAIAP3O94812 1187 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 TOMM70O94826 608 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 UMPSP11172 480 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 EDNRAP25101 427 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 MAPK4P31152 587 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 RGRP47804 291 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 ZNF75DP51815 510 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 UCNP55089 124 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 HSPB3Q12988 150 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 TMEM266Q2M3C6 531 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 TIMM50Q3ZCQ8 353 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 GORABQ5T7V8 394 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 EMBQ6PCB8 327 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 CTR9Q6PD62 1173 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 MMS22LQ6ZRQ5 1243 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 LPGAT1Q92604 370 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 SPACA9Q96E40 222 aaPredicted RBP1.97□□□□□ -2.09
SCN1A-208ENST00000625916 PPM1MQ96MI6 270 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 MOB1AQ9H8S9 216 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms