RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 HOXD9P28356 352 aaPredicted RBP12.21□□□□□ -0.45
LIG1-221ENST00000613670 RYKP34925 604 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 PTPN5P54829 565 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 C2orf80Q0P641 193 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 RNF180Q86T96 592 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 SLC5A8Q8N695 610 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 TEX26Q8N6G2 289 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 CLP1Q92989 425 aaKnown RBP12.21□□□□□ -0.45
LIG1-221ENST00000613670 PPCDCQ96CD2 204 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 GFM1Q96RP9 751 aaKnown RBP12.21□□□□□ -0.45
LIG1-221ENST00000613670 POLR2J2Q9GZM3 115 aaKnown RBP12.21□□□□□ -0.45
LIG1-221ENST00000613670 HDHD2Q9H0R4 259 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 RNF167Q9H6Y7 350 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 NUDT7P0C024 238 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 MYL12AP19105 171 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 SLC16A1P53985 500 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 ELAVL2Q12926 359 aaKnown RBP12.21□□□□□ -0.46
LIG1-221ENST00000613670 CTF1Q16619 201 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 TJAP1Q5JTD0 557 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 C10orf62Q5T681 223 aaPredicted RBP12.21□□□□□ -0.46
LIG1-221ENST00000613670 NEK5Q6P3R8 708 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 DDX53Q86TM3 631 aaKnown RBP12.21□□□□□ -0.46
LIG1-221ENST00000613670 ARL14EPQ8N8R7 260 aaPredicted RBP12.21□□□□□ -0.46
LIG1-221ENST00000613670 COL21A1Q96P44 957 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 KATNBL1Q9H079 304 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 TRPV5Q9NQA5 729 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 IL17CQ9P0M4 197 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 MOSPD1Q9UJG1 213 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 OARD1Q9Y530 152 aa12.21□□□□□ -0.46
LIG1-221ENST00000613670 SOBPA7XYQ1 873 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 CCRL2O00421 344 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 DYRK3O43781 588 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 LAMP1P11279 417 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 SDC1P18827 310 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 GSTM5P46439 218 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 CLK3P49761 638 aaKnown RBP12.2□□□□□ -0.46
LIG1-221ENST00000613670 SUOXP51687 545 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 MTA1Q13330 715 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 AGAP7PQ5VUJ5 663 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 GTF2IRD2BQ6EKJ0 949 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 TRIM40Q6P9F5 258 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 GTF2IRD2Q86UP8 949 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 UPF1Q92900 1129 aaKnown RBP eCLIP12.2□□□□□ -0.46
LIG1-221ENST00000613670 RHBDF1Q96CC6 855 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 MAGIXQ9H6Y5 334 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 THG1LQ9NWX6 298 aaKnown RBP12.2□□□□□ -0.46
LIG1-221ENST00000613670 TAS2R16Q9NYV7 291 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 DNAJC27Q9NZQ0 273 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 CFL2Q9Y281 166 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 KCNE2Q9Y6J6 123 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 CTDSP2O14595 271 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 ZNF623O75123 536 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 PRAMEF12O95522 483 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 HOXB6P17509 224 aaKnown RBP12.2□□□□□ -0.46
LIG1-221ENST00000613670 RAB25P57735 213 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 CNTN1Q12860 1018 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 QPRTQ15274 297 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 GCNT6Q5T4J0 391 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 SPRYD7Q5W111 196 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 FAM180BQ6P0A1 224 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 PLET1Q6UQ28 207 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 SBSNQ6UWP8 590 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 ZNF517Q6ZMY9 492 aaPredicted RBP12.2□□□□□ -0.46
LIG1-221ENST00000613670 DEFB128Q7Z7B8 93 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 TSPAN33Q86UF1 283 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 GALNT12Q8IXK2 581 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 MRPS31Q92665 395 aaKnown RBP12.2□□□□□ -0.46
LIG1-221ENST00000613670 POP5Q969H6 163 aaKnown RBP12.2□□□□□ -0.46
LIG1-221ENST00000613670 TMEM169Q96HH4 297 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 MGLLQ99685 303 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 COQ7Q99807 217 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 SLC30A2Q9BRI3 323 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 IL1RAPQ9NPH3 570 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 SLC6A13Q9NSD5 602 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 RUVBL1Q9Y265 456 aaKnown RBP12.2□□□□□ -0.46
LIG1-221ENST00000613670 APOL3O95236 402 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 ANXA8P13928 327 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 LIPAP38571 399 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 CSNK2BP67870 215 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 IQCCQ4KMZ1 466 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 TNFAIP8L2Q6P589 184 aaPredicted RBP12.2□□□□□ -0.46
LIG1-221ENST00000613670 DNAJB8Q8NHS0 232 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 NFKBIDQ8NI38 313 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 DNASE1L2Q92874 299 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 CPNE5Q9HCH3 593 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 ELOVL2Q9NXB9 296 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 VNN3Q9NY84 501 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 TBC1D14Q9P2M4 693 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 TRPS1Q9UHF7 1281 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 ACSL6Q9UKU0 697 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 ABT1Q9ULW3 272 aaKnown RBP12.2□□□□□ -0.46
LIG1-221ENST00000613670 BOLA1Q9Y3E2 137 aa12.2□□□□□ -0.46
LIG1-221ENST00000613670 AGAP5A6NIR3 686 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 FADS2P1A8MWK0 482 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 CCNB2O95067 398 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 ELNP15502 786 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 IFNA8P32881 189 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 HMGCLP35914 325 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 SNRPD1P62314 119 aaKnown RBP12.19□□□□□ -0.46
LIG1-221ENST00000613670 PROX2Q3B8N5 592 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms