RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 HSD3B2P26439 372 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 TXNL4AP83876 142 aaKnown RBP13.94□□□□□ -0.18
VRK3-217ENST00000599538 TMEM196Q5HYL7 178 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 ATG9BQ674R7 924 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 CES5AQ6NT32 575 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 ST13P4Q8IZP2 240 aaPredicted RBP13.94□□□□□ -0.18
VRK3-217ENST00000599538 CLEC4FQ8N1N0 589 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 TP53I13Q8NBR0 393 aaPredicted RBP13.94□□□□□ -0.18
VRK3-217ENST00000599538 SLC5A11Q8WWX8 675 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 SH3KBP1Q96B97 665 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 FAM120BQ96EK7 910 aaKnown RBP13.94□□□□□ -0.18
VRK3-217ENST00000599538 WDR34Q96EX3 536 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 PANX1Q96RD7 426 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 PRPF18Q99633 342 aaKnown RBP13.94□□□□□ -0.18
VRK3-217ENST00000599538 TEX101Q9BY14 249 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 YIPF3Q9GZM5 350 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 CCDC177Q9NQR7 707 aaPredicted RBP13.94□□□□□ -0.18
VRK3-217ENST00000599538 ITM2CQ9NQX7 267 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 WDR37Q9Y2I8 494 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 SCAMP1O15126 338 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 PRKD3O94806 890 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 KLHL18O94889 574 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 CPSF4O95639 269 aaKnown RBP13.93□□□□□ -0.18
VRK3-217ENST00000599538 CLIC3O95833 236 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 LDLRP01130 860 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 FAM58BPP0C7Q3 252 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 PSMB5P28074 263 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 IST1P53990 364 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 PON2Q15165 354 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 RAB30Q15771 203 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 METRNLQ641Q3 311 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 NXPE4Q6UWF7 544 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 CHST15Q7LFX5 561 aaPredicted RBP13.93□□□□□ -0.18
VRK3-217ENST00000599538 VN1R5Q7Z5H4 357 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 LAS2Q8IYD9 372 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 FAM9CQ8IZT9 166 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 WDR48Q8TAF3 677 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 PNPT1Q8TCS8 783 aaKnown RBP13.93□□□□□ -0.18
VRK3-217ENST00000599538 TFAP2CQ92754 450 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 SH3GL1Q99961 368 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 MYOCQ99972 504 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 SOX17Q9H6I2 414 aaPredicted RBP13.93□□□□□ -0.18
VRK3-217ENST00000599538 FZD3Q9NPG1 666 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 FBXL12Q9NXK8 326 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 PLEKHM1Q9Y4G2 1056 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 GOLGA4Q13439 2230 aaKnown RBP13.93□□□□□ -0.18
VRK3-217ENST00000599538 TRIOO75962 3097 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 SCAMP2O15127 329 aaKnown RBP13.93□□□□□ -0.18
VRK3-217ENST00000599538 CLOCKO15516 846 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 ADAM23O75077 832 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 CREG1O75629 220 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 ADH1BP00325 375 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 FCGR1AP12314 374 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 COL9A1P20849 921 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 MAT2AP31153 395 aaKnown RBP13.93□□□□□ -0.18
VRK3-217ENST00000599538 TRIM23P36406 574 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 MC1RQ01726 317 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 SRSF11Q05519 484 aaKnown RBP13.93□□□□□ -0.18
VRK3-217ENST00000599538 LAPTM5Q13571 262 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 C16orf72Q14CZ0 275 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 DUOXA1Q1HG43 343 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 ZNF385BQ569K4 471 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 PRAMEF14Q5SWL7 426 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 PRAMEF13Q5VWM6 474 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 UNC5DQ6UXZ4 953 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 ZNF621Q6ZSS3 439 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 GALNT10Q86SR1 603 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 MFSD2AQ8NA29 543 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 OR8J2Q8NGG1 315 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 GANCQ8TET4 914 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 NELL1Q92832 810 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 FAM162AQ96A26 154 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 RAD51AP1Q96B01 352 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 MENTQ9BUN1 341 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 C9orf16Q9BUW7 83 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 WDR26Q9H7D7 661 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 DMRT3Q9NQL9 472 aa13.93□□□□□ -0.18
VRK3-217ENST00000599538 GNG14A0A1W2PPG7 69 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 FAM220BPB1ANY3 271 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 CLIC1O00299 241 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 PCDH7O60245 1069 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 RASAL1O95294 804 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 RAP2AP10114 183 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 ACP5P13686 325 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 ZNF23P17027 643 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 ENGP17813 658 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 IDSP22304 550 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 TIA1P31483 386 aaKnown RBP eCLIP13.92□□□□□ -0.18
VRK3-217ENST00000599538 CLCNKAP51800 687 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 PPP1R8Q12972 351 aaKnown RBP13.92□□□□□ -0.18
VRK3-217ENST00000599538 TMTC4Q5T4D3 741 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 COMMD6Q7Z4G1 85 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 OXR1Q8N573 874 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 OR14C36Q8NHC7 312 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 MAGEE2Q8TD90 523 aaPredicted RBP13.92□□□□□ -0.18
VRK3-217ENST00000599538 NCLNQ969V3 563 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 DPH2Q9BQC3 489 aaPredicted RBP13.92□□□□□ -0.18
VRK3-217ENST00000599538 EFCAB11Q9BUY7 163 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 DUSP26Q9BV47 211 aa13.92□□□□□ -0.18
VRK3-217ENST00000599538 SORBS1Q9BX66 1292 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms