RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MOCOSQ96EN8 888 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 C10orf90Q96M02 699 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 LRFN5Q96NI6 719 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 CCDC77Q9BR77 488 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 CD244Q9BZW8 370 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 WWOXQ9NZC7 414 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 TMEM216Q9P0N5 145 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 RUVBL1Q9Y265 456 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 SNRNP200O75643 2136 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 AHCTF1Q8WYP5 2266 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 ACACAQ13085 2346 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 KCNE1BA0A087WTH5 132 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 IQANK1A0A1B0GTG1 560 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 TLDC2A0PJX2 215 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 STK16O75716 305 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 SIX3O95343 332 aaPredicted RBP13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 COL6A2P12110 1019 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 EZRP15311 586 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 TCN2P20062 427 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 CD22P20273 847 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 HRH2P25021 359 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 DLSTP36957 453 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 ATP1A2P50993 1020 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 CCR8P51685 355 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 RPS18P62269 152 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 CYP4F2P78329 520 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 RASA2Q15283 850 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 PFKFB4Q16877 469 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 LGSNQ5TDP6 509 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 FAM198BQ6UWH4 519 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 TTLL10Q6ZVT0 673 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 MREGQ8N565 214 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 ANKRD53Q8N9V6 530 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 UBTD2Q8WUN7 234 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 MR1Q95460 341 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 SARGQ9BW04 601 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 C12orf65Q9H3J6 166 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 PRORYQ9H606 182 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 CUTCQ9NTM9 273 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 DNAJC11Q9NVH1 559 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 IRAK4Q9NWZ3 460 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 CPSF2Q9P2I0 782 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 XPR1Q9UBH6 696 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 PCDHGA4Q9Y5G9 962 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 AP1M2Q9Y6Q5 423 aa13.56□□□□□ -0.24
SHKBP1-217ENST00000598558 ANKRD11Q6UB99 2663 aaPredicted RBP13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 HYKKA2RU49 373 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 K7ENP7 123 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 TK2O00142 265 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 NKX2-8O15522 239 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 FOXS1O43638 330 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 CCNT2O60583 730 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 CCNYL3P0C7X3 344 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 C1GALT1C1LP0DN25 315 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 ALAS2P22557 587 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 OR1D4P47884 311 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 CXADRP78310 365 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 REEP5Q00765 189 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 CDC16Q13042 620 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 DNASE1L3Q13609 305 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 GRM7Q14831 915 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 SLC9A5Q14940 896 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 NAA25Q14CX7 972 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 SETDB1Q15047 1291 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 TCTE1Q5JU00 501 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 ATP1A1-AS1Q5TC04 95 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 ARHGAP40Q5TG30 622 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 FAM219BQ5XKK7 198 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 INO80CQ6PI98 192 aaPredicted RBP13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 CCDC81Q6ZN84 652 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 COX15Q7KZN9 410 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 TMPRSS11BQ86T26 416 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 TCAIMQ8N3R3 496 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 METTL27Q8N6F8 245 aaPredicted RBP13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 CSNK1A1LQ8N752 337 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 MFSD9Q8NBP5 474 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 SCYL1Q96KG9 808 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 NDC1Q9BTX1 674 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 AICDAQ9GZX7 198 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 GPN2Q9H9Y4 310 aaPredicted RBP13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 PELI2Q9HAT8 420 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 ACSS2Q9NR19 701 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 GEMIN8Q9NWZ8 242 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 EMCNQ9ULC0 261 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 ZNF490Q9ULM2 529 aaPredicted RBP13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 DYRK1BQ9Y463 629 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 KCNE2Q9Y6J6 123 aa13.55□□□□□ -0.24
SHKBP1-217ENST00000598558 TRBC2A0A5B9 178 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 CCDC189A1A4V9 331 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 OR1F1O43749 312 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 KATNA1O75449 491 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 TBX6O95947 436 aaPredicted RBP13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 MT-ND3P03897 115 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 RBP1P09455 135 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 FURINP09958 794 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 SCTRP47872 440 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 RPS15AP62244 130 aaKnown RBP13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 VAC14Q08AM6 782 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 DOC2AQ14183 400 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 NKAIN1Q4KMZ8 207 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms