RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FAM136AQ96C01 138 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 PDLIM2Q96JY6 352 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 TCF12Q99081 682 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 NAP1L3Q99457 506 aaPredicted RBP11.88□□□□□ -0.51
TRIM28-212ENST00000597995 SLC30A3Q99726 388 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 PLCD4Q9BRC7 762 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 ZNF700Q9H0M5 742 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 UTP6Q9NYH9 597 aaKnown RBP11.88□□□□□ -0.51
TRIM28-212ENST00000597995 STOX2Q9P2F5 926 aaPredicted RBP11.88□□□□□ -0.51
TRIM28-212ENST00000597995 RUVBL1Q9Y265 456 aaKnown RBP11.88□□□□□ -0.51
TRIM28-212ENST00000597995 PKDREJQ9NTG1 2253 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 OR5H15A6NDH6 313 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 CCL21O00585 134 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 CES2O00748 559 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 FANCGO15287 622 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 KIF5CO60282 957 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 UNC5CO95185 931 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 WDPCPO95876 746 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 UQCRHP07919 91 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 PKMP14618 531 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 GRNP28799 593 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 HSD17B2P37059 387 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 CA7P43166 264 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 EEF1A2Q05639 463 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 RBPJQ06330 500 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 DHX34Q14147 1143 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 FASTKQ14296 549 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 PCOLCEQ15113 449 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 ZNF630Q2M218 657 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 ZXDCQ2QGD7 858 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 ACSBG2Q5FVE4 666 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 RNASEH2BQ5TBB1 312 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 ABHD17BQ5VST6 288 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 HIBCHQ6NVY1 386 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 ZNF549Q6P9A3 640 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 XKRXQ6PP77 449 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 TMEM205Q6UW68 189 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 GDF7Q7Z4P5 450 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 SDCCAG8Q86SQ7 713 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 PAQR7Q86WK9 346 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 ARHGEF39Q8N4T4 335 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 CSNK1A1LQ8N752 337 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 AMER3Q8N944 861 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 MMABQ96EY8 250 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 CCDC120Q96HB5 630 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 IMMP1LQ96LU5 166 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 OR2A5Q96R48 311 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 TUBB6Q9BUF5 446 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 YIPF2Q9BWQ6 316 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 DDX47Q9H0S4 455 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 XAB2Q9HCS7 855 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 MRPS30Q9NP92 439 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 STMN3Q9NZ72 180 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 SEC14L3Q9UDX4 400 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 TSR3Q9UJK0 312 aaKnown RBP11.87□□□□□ -0.51
TRIM28-212ENST00000597995 PYCARDQ9ULZ3 195 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 PDZD2O15018 2839 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 HEATR5BQ9P2D3 2071 aa11.87□□□□□ -0.51
TRIM28-212ENST00000597995 PCNX1Q96RV3 2341 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 FBN2P35556 2912 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 MAGEB16A2A368 324 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 H3BMM5 538 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 FOXS1O43638 330 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 PRAMEF2O60811 474 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 CCNDBP1O95273 360 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 ESR1P03372 595 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 CELA2AP08217 269 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 CYC1P08574 325 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 ANXA5P08758 320 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 ITGAMP11215 1152 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 AGAP20933 346 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 IVDP26440 423 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 MST1P26927 711 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 HTR1EP28566 365 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 RPA3P35244 121 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-212ENST00000597995 CLCN7P51798 805 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 RIPPLY3P57055 190 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 YBX1P67809 324 aaKnown RBP11.86□□□□□ -0.51
TRIM28-212ENST00000597995 PRDX1Q06830 199 aaKnown RBP11.86□□□□□ -0.51
TRIM28-212ENST00000597995 CTBP1Q13363 440 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 FAM53BQ14153 422 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 LONRF1Q17RB8 773 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 HKDC1Q2TB90 917 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 MSS51Q4VC12 460 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 RNF187Q5TA31 235 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-212ENST00000597995 ZNF470Q6ECI4 717 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 FAAH2Q6GMR7 532 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 ZNF425Q6IV72 752 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 CREG2Q8IUH2 290 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 GIMAP7Q8NHV1 300 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 RERGQ96A58 199 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-212ENST00000597995 ACAT2Q9BWD1 397 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 DRC3Q9H069 523 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 PLAC1Q9HBJ0 212 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 FBXO6Q9NRD1 293 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-212ENST00000597995 SAMD15Q9P1V8 674 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 TEKT2Q9UIF3 430 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 PCDHGB6Q9Y5F9 930 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 CPAMD8Q8IZJ3 1885 aa11.86□□□□□ -0.51
TRIM28-212ENST00000597995 POLQO75417 2590 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms