RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 KERAO60938 352 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 WDR47O94967 919 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 ITGB2P05107 769 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 GNAZP19086 355 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 SLC6A12P48065 614 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 IRF9Q00978 393 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 MUM1Q2TAK8 710 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 NKAIN1Q4KMZ8 207 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 GARNL3Q5VVW2 1013 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 LCN10Q6JVE6 187 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 C16orf46Q6P387 395 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 SYVN1Q86TM6 617 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 CENPLQ8N0S6 344 aaPredicted RBP14.35□□□□□ -0.11
UPF1-202ENST00000594243 PDPRQ8NCN5 879 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 KCTD4Q8WVF5 259 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 UBLCP1Q8WVY7 318 aaPredicted RBP14.35□□□□□ -0.11
UPF1-202ENST00000594243 NEIL2Q969S2 332 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 ISL2Q96A47 359 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 CABS1Q96KC9 395 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 ACTL8Q9H568 366 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 PTBP2Q9UKA9 531 aaKnown RBP14.35□□□□□ -0.11
UPF1-202ENST00000594243 SH2B3Q9UQQ2 575 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 PADI2Q9Y2J8 665 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 FASNP49327 2511 aaKnown RBP14.35□□□□□ -0.11
UPF1-202ENST00000594243 IGSF10Q6WRI0 2623 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 IQANK1A0A1B0GTG1 560 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 FEZF1A0PJY2 475 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 TRIM49D1C9J1S8 452 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 ERVH48-1M5A8F1 160 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 TAPBPO15533 448 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 H2AFYO75367 372 aaKnown RBP14.34□□□□□ -0.11
UPF1-202ENST00000594243 STK16O75716 305 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 CAPN1P07384 714 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 COL6A2P12110 1019 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 CXCR2P25025 360 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 GMPRP36959 345 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 GDF5P43026 501 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 MAGEA12P43365 314 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 KCNC1P48547 511 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 CYP4F2P78329 520 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 CDC20Q12834 499 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 ERV3-1Q14264 604 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 NDUFA9Q16795 377 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 PRTGQ2VWP7 1150 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 CATSPEREQ5SY80 951 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 MLIPQ5VWP3 458 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 PRMT9Q6P2P2 845 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 PLD3Q8IV08 490 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 ENDOVQ8N8Q3 282 aaKnown RBP14.34□□□□□ -0.11
UPF1-202ENST00000594243 TSNARE1Q96NA8 513 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 UBL7Q96S82 380 aaPredicted RBP14.34□□□□□ -0.11
UPF1-202ENST00000594243 ATOH8Q96SQ7 321 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 SARGQ9BW04 601 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 PELI2Q9HAT8 420 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 GPRC5BQ9NZH0 403 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 NUDT4Q9NZJ9 180 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 TCFL5Q9UL49 500 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 CDC14AQ9UNH5 594 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 PCM1Q15154 2024 aa14.34□□□□□ -0.11
UPF1-202ENST00000594243 TRBC2A0A5B9 178 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 SUPT3HB4E1H0 165 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 CLGNO14967 610 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 OR1F1O43749 312 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 LCMT2O60294 686 aaKnown RBP14.33□□□□□ -0.12
UPF1-202ENST00000594243 SUPT3HO75486 399 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 ONECUT2O95948 504 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 ALBP02768 609 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 RBP1P09455 135 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 PRKAR1AP10644 381 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 GCAP28676 217 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 GLRBP48167 497 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 CDC16Q13042 620 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 NCF4Q15080 339 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 TSNAXIP1Q2TAA8 658 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 HKDC1Q2TB90 917 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 C18orf21Q32NC0 220 aaPredicted RBP14.33□□□□□ -0.12
UPF1-202ENST00000594243 WDR93Q6P2C0 686 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 NXPE4Q6UWF7 544 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 FAM198BQ6UWH4 519 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 TIFABQ6ZNK6 161 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 MFSD9Q8NBP5 474 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 CAMKVQ8NCB2 501 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 EXT2Q93063 718 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 TM4SF19Q96DZ7 209 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 MVB12AQ96EY5 273 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 WBP1Q96G27 269 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 RUFY1Q96T51 708 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 AIF1LQ9BQI0 150 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 TMEM79Q9BSE2 394 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 CD244Q9BZW8 370 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 EPB41L4BQ9H329 900 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 PPCSQ9HAB8 311 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 ZNF304Q9HCX3 659 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 DNAJC11Q9NVH1 559 aa14.33□□□□□ -0.12
UPF1-202ENST00000594243 RUVBL1Q9Y265 456 aaKnown RBP14.33□□□□□ -0.12
UPF1-202ENST00000594243 LOC400499M0QZD8 3231 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 MAP2K7O14733 419 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 PRPF4O43172 522 aaKnown RBP eCLIP14.32□□□□□ -0.12
UPF1-202ENST00000594243 CCNT2O60583 730 aaKnown RBP14.32□□□□□ -0.12
UPF1-202ENST00000594243 C1GALT1C1LP0DN25 315 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms