RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 ECI2O75521 394 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PRDM1O75626 825 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PLEKHA8P1O95397 391 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 LSM8O95777 96 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 MT-CO3P00414 261 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PLA2G4BP0C869 781 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 WARSP23381 471 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 NR4A2P43354 598 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 GLUD2P49448 558 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 TAF6P49848 677 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 GSCP56915 257 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 FKBP3Q00688 224 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 CFHR3Q02985 330 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PCLAFQ15004 111 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 MORF4L2Q15014 288 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 DUSP6Q16828 381 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ANKRD20A4Q4UJ75 823 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ANKRD20A8PQ5CZ79 823 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ANKRD20A2Q5SQ80 823 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 WASHC2DQ5SRD0 308 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ANKRD20A1Q5TYW2 823 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 FAM69BQ5VUD6 431 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ANKRD20A3Q5VUR7 823 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ZNF626Q68DY1 528 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ARMCX5Q6P1M9 558 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 CYB5D1Q6P9G0 228 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 AAGABQ6PD74 315 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PCSK4Q6UW60 755 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ABRAXAS1Q6UWZ7 409 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 C4orf22Q6V702 233 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 FBXO16Q8IX29 292 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 LINC00301Q8NCQ3 95 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 FAM110DQ8TAY7 271 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ANP32BQ92688 251 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 MTERF3Q96E29 417 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 SPACA9Q96E40 222 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 CAMK1GQ96NX5 476 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 TEX101Q9BY14 249 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ELOVL4Q9GZR5 314 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 DDX47Q9H0S4 455 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 C1orf21Q9H246 121 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 MMP27Q9H306 513 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 MAGEE1Q9HCI5 957 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 VAT1LQ9HCJ6 419 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 FZD3Q9NPG1 666 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 SPATS2LQ9NUQ6 558 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ZBTB32Q9Y2Y4 487 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 TCRBV21S2A2A0A5A6 115 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 CPED1A4D0V7 1026 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 FAM90A7PA6NKC0 464 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 FAM90A22PA8MWA6 464 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 FAM90A12PA8MX19 464 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 A8MXE2 369 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 FAM90A23PA8MXZ1 464 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 M0QZQ0 153 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 CLDN3O15551 220 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 NMT2O60551 498 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 UGDHO60701 494 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 JRKO75564 520 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 GABRB1P18505 474 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 CETN2P41208 172 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 SYKP43405 635 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 MTTPP55157 894 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 LAMTOR4Q0VGL1 99 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 CYP1B1Q16678 543 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 DCAF6Q58WW2 860 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 PRAMEF19Q5SWL8 479 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 N4BP2L1Q5TBK1 243 aaPredicted RBP1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 ATF7IP2Q5U623 682 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 TYW3Q6IPR3 259 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 C1orf186Q6ZWK4 172 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 DHX40Q8IX18 779 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 CDK20Q8IZL9 346 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 SLC39A11Q8N1S5 342 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 PARP16Q8N5Y8 322 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 HORMAD2Q8N7B1 307 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 XXYLT1Q8NBI6 393 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 FAM98AQ8NCA5 519 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 SETD9Q8NE22 299 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 LPCAT1Q8NF37 534 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 ZNF397Q8NF99 534 aaPredicted RBP1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 ZNF398Q8TD17 642 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 HCAR2Q8TDS4 363 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 FCGR1BQ92637 280 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 THRSPQ92748 146 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 FER1L6-AS2Q96M78 137 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 ACBD6Q9BR61 282 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 SLC25A23Q9BV35 468 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 FAM129AQ9BZQ8 928 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 POLR3FQ9H1D9 316 aaPredicted RBP1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 NXF3Q9H4D5 531 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 CXorf56Q9H5V9 222 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 GRHL1Q9NZI5 618 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 NCKIPSDQ9NZQ3 722 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 CACNG4Q9UBN1 327 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 UBA2Q9UBT2 640 aaPredicted RBP1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 HSPB7Q9UBY9 170 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 PLEKHB1Q9UF11 243 aaPredicted RBP1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 OR14J1Q9UGF5 321 aa1.86□□□□□ -2.11
SMCHD1-211ENST00000584897 SLC12A6Q9UHW9 1150 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms