RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ZXDCQ2QGD7 858 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-206ENST00000579558 GARNL3Q5VVW2 1013 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 SHISA6Q6ZSJ9 500 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 CTAGE3PQ8IX95 158 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 ANKRD49Q8WVL7 239 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 MVB12AQ96EY5 273 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 FER1L6-AS2Q96M78 137 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 RBBP8Q99708 897 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 P4HTMQ9NXG6 502 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 G3BP2Q9UN86 482 aaKnown RBP22.76■■□□□ 1.23
SHMT1-206ENST00000579558 A6NL46 340 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 PYCARD-AS1I3L0S3 204 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 IGHEP01854 428 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 STATHP02808 62 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 NPPBP16860 134 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 OCA2Q04671 838 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 KLRB1Q12918 225 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 USP10Q14694 798 aaKnown RBP22.75■■□□□ 1.23
SHMT1-206ENST00000579558 THAP11Q96EK4 314 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 TSPAN17Q96FV3 270 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 TRIM4Q9C037 500 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 CAB39LQ9H9S4 337 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 LRRC4CQ9HCJ2 640 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 CTNNAL1Q9UBT7 734 aa22.75■■□□□ 1.23
SHMT1-206ENST00000579558 ZNF282Q9UDV7 671 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-206ENST00000579558 TNRC6AQ8NDV7 1962 aaKnown RBP22.75■■□□□ 1.23
SHMT1-206ENST00000579558 SETXQ7Z333 2677 aaKnown RBP22.74■■□□□ 1.23
SHMT1-206ENST00000579558 VSTM2BA6NLU5 285 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 PRPF4O43172 522 aaKnown RBP eCLIP22.74■■□□□ 1.23
SHMT1-206ENST00000579558 CEACAM4O75871 244 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 C1QAP02745 245 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 MMP11P24347 488 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 STX2P32856 288 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 GRK3P35626 688 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 GUCY2DQ02846 1103 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 NDUFA9Q16795 377 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 KBTBD12Q3ZCT8 623 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 DCAF10Q5QP82 559 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 FRA10AC1Q70Z53 315 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 ARHGEF39Q8N4T4 335 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 PPM1NQ8N819 430 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 TEX19Q8NA77 164 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 CLEC1AQ8NC01 280 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 FDCSPQ8NFU4 85 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 STT3BQ8TCJ2 826 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 FBF1Q8TES7 1133 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 MIEF2Q96C03 454 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 GPR22Q99680 433 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 DRC3Q9H069 523 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 MLXIPLQ9NP71 852 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 OARD1Q9Y530 152 aa22.74■■□□□ 1.23
SHMT1-206ENST00000579558 FLNBO75369 2602 aaKnown RBP22.74■■□□□ 1.23
SHMT1-206ENST00000579558 KCNE1BA0A087WTH5 132 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 FEZF1A0PJY2 475 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 ZIC2O95409 532 aaPredicted RBP22.73■■□□□ 1.23
SHMT1-206ENST00000579558 TUBB4AP04350 444 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 ANXA5P08758 320 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 CASRP41180 1078 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 DSG2Q14126 1118 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 TSNQ15631 228 aaKnown RBP22.73■■□□□ 1.23
SHMT1-206ENST00000579558 COLEC12Q5KU26 742 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 VN1R4Q7Z5H5 301 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 ADAMTSL2Q86TH1 951 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 PRSS58Q8IYP2 241 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 MMGT1Q8N4V1 131 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 MNS1Q8NEH6 495 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 NACC2Q96BF6 587 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 MMABQ96EY8 250 aaPredicted RBP22.73■■□□□ 1.23
SHMT1-206ENST00000579558 OR4K3Q96R72 315 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 EGFL8Q99944 293 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 CRB3Q9BUF7 120 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 YIPF2Q9BWQ6 316 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 ZDHHC18Q9NUE0 388 aa22.73■■□□□ 1.23
SHMT1-206ENST00000579558 A0A0A6YYC8 382 aaPredicted RBP22.72■■□□□ 1.23
SHMT1-206ENST00000579558 I3L1I5 382 aaPredicted RBP22.72■■□□□ 1.23
SHMT1-206ENST00000579558 AGPSO00116 658 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 KIF2AO00139 706 aaPredicted RBP22.72■■□□□ 1.23
SHMT1-206ENST00000579558 PHGDHO43175 533 aaKnown RBP22.72■■□□□ 1.23
SHMT1-206ENST00000579558 WISP3O95389 354 aaPredicted RBP22.72■■□□□ 1.23
SHMT1-206ENST00000579558 ZGLP1P0C6A0 271 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 STMN1P16949 149 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 SPRP35270 261 aaPredicted RBP22.72■■□□□ 1.23
SHMT1-206ENST00000579558 BCL6P41182 706 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 CCR8P51685 355 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 CDKL1Q00532 357 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 RBBP7Q16576 425 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 GRTP1Q5TC63 336 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 ABHD11Q8NFV4 315 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 NUDT9Q9BW91 350 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 UNKQ9C0B0 810 aaKnown RBP22.72■■□□□ 1.23
SHMT1-206ENST00000579558 DERL2Q9GZP9 239 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 EPN3Q9H201 632 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 SEMA3GQ9NS98 782 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 GPR83Q9NYM4 423 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 TRPC4Q9UBN4 977 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 ZNF451Q9Y4E5 1061 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 HS3ST3B1Q9Y662 390 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 NUP210LQ5VU65 1888 aa22.72■■□□□ 1.23
SHMT1-206ENST00000579558 FFAR3O14843 346 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 GPR42O15529 346 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms