RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 U3KQV3 271 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 MTCL1Q9Y4B5 1905 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 TRIM64BA6NI03 449 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 PSMD11O00231 422 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 SCAMP2O15127 329 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 MYO1DO94832 1006 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ATE1O95260 518 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ETHE1O95571 254 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ZNF682O95780 498 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 LAMP1P11279 417 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 FOSL1P15407 271 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 IL7RP16871 459 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 PDHA2P29803 388 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 BMPR1AP36894 532 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 DGKGP49619 791 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 RAE1P78406 368 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 HPCAP84074 193 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 E2F2Q14209 437 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 RFX4Q33E94 735 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ZNF658BQ4V348 819 aaPredicted RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 LRRC23Q53EV4 343 aaPredicted RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 ZC3H12BQ5HYM0 836 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 ADNP2Q6IQ32 1131 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ERICH5Q6P6B1 374 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 SHQ1Q6PI26 577 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 GRASPQ7Z6J2 395 aaPredicted RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 KRT77Q7Z794 578 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 RBM23Q86U06 439 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 PTOV1Q86YD1 416 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 CLECL1Q8IZS7 167 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ARL10Q8N8L6 244 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 OR7G3Q8NG95 312 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 OR13F1Q8NGS4 319 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 SPPL3Q8TCT6 385 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 COQ10AQ96MF6 247 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 FOPNLQ96NB1 174 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 LRRC3BQ96PB8 259 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 EPHX3Q9H6B9 360 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 IL1RAPQ9NPH3 570 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 VNN3Q9NY84 501 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 GULP1Q9UBP9 304 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 NOTCH4Q99466 2003 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 ANKRD33BA6NCL7 494 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 PRSS47A8MTI9 375 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 SLC16A6O15403 523 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 XYLBO75191 536 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 CPSF4O95639 269 aaKnown RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 SEMG1P04279 462 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 CYP17A1P05093 508 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 HNRNPA1P09651 372 aaKnown RBP eCLIP9.73□□□□□ -0.85
VPS53-220ENST00000576149 EPCAMP16422 314 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 KDELR2P33947 212 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 CTNNB1P35222 781 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 ASMTP46597 345 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 RAD23AP54725 363 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 TPD52P55327 224 aaPredicted RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 ISL1P61371 349 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 DCTN2Q13561 401 aaKnown RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 MEP1AQ16819 746 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 CTU2Q2VPK5 515 aaKnown RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 ZNF691Q5VV52 312 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 XAF1Q6GPH4 301 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 SLCO4C1Q6ZQN7 724 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 TMEM26Q6ZUK4 368 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 C1orf52Q8N6N3 182 aaKnown RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 FBXO15Q8NCQ5 510 aaPredicted RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 HUS1BQ8NHY5 278 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 SP7Q8TDD2 431 aaPredicted RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 CHTF18Q8WVB6 975 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 ING5Q8WYH8 240 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 DTD2Q96FN9 168 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 PHF12Q96QT6 1004 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 DUSP26Q9BV47 211 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 GABARAPL1Q9H0R8 117 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 FANCEQ9HB96 536 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 TMEM9Q9P0T7 183 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 CXXC1Q9P0U4 656 aaPredicted RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 PCDHB11Q9Y5F2 797 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 GABRR3A8MPY1 467 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 H3BM21 787 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 KPNA3O00505 521 aaPredicted RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 SPINT1O43278 529 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 SEC14L2O76054 403 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 C1orf105O95561 183 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 SOD1P00441 154 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 FGBP02675 491 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 ANXA4P09525 319 aaPredicted RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 CEBPBP17676 345 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 PBLDP30039 288 aaPredicted RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 RYKP34925 604 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 GJA8P48165 433 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 EMP3P54852 163 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 GABARAPL2P60520 117 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 CD47Q08722 323 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 OR2T5Q6IEZ7 315 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 LAIR2Q6ISS4 152 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 ANKRD26P1Q6NSI1 321 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 ARHGAP22Q7Z5H3 698 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 CAMKMTQ7Z624 323 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 C12orf40Q86WS4 652 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms