RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 DSG2Q14126 1118 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 TLR1Q15399 786 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 ZRSR2Q15696 482 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 MUM1Q2TAK8 710 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 KIAA0930Q6ICG6 404 aaPredicted RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 TMEM205Q6UW68 189 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 NDUFAF7Q7L592 441 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 VN1R4Q7Z5H5 301 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 CILP2Q8IUL8 1156 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 ZC3H7AQ8IWR0 971 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 REXO1L1PQ8IX06 675 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 PRELID2Q8N945 189 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 CCDC89Q8N998 374 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 BRIX1Q8TDN6 353 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 COG1Q8WTW3 980 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 ZNF480Q8WV37 535 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 HAS2Q92819 552 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 MIEF2Q96C03 454 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 CABS1Q96KC9 395 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 CNDP1Q96KN2 507 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 IMMP1LQ96LU5 166 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 TGIF2Q9GZN2 237 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 AGPAT4Q9NRZ5 378 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 ZNF446Q9NWS9 450 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 ZNF282Q9UDV7 671 aaPredicted RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 SH2B3Q9UQQ2 575 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 OSGIN2Q9Y236 505 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 NEU2Q9Y3R4 380 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 FAM169AQ9Y6X4 670 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 ZNF469Q96JG9 3925 aaPredicted RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 CELSR1Q9NYQ6 3014 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 INTS1Q8N201 2190 aaKnown RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 HCFC1P51610 2035 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 NSG1A0A0A6YYJ2 146 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 ZCWPW2A0A1B0GU75 182 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 GFYI3L273 518 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 MAP2K7O14733 419 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 HAT1O14929 419 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 JRKO75564 520 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 URI1O94763 535 aaPredicted RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 WDPCPO95876 746 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 SLC16A8O95907 504 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 F10P00742 488 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 FGGP02679 453 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 STATHP02808 62 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 ESR1P03372 595 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 SERPINA7P05543 415 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 OGNP20774 298 aaKnown RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 GRNP28799 593 aaKnown RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 IMPA1P29218 277 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 CMPK1P30085 196 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 SKIV2L2P42285 1042 aaKnown RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 MAGEA3P43357 314 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 PNLIPRP1P54315 467 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 EMP2P54851 167 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 KCNK10P57789 538 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 MAT1AQ00266 395 aaKnown RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 CDK16Q00536 496 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 RELAQ04206 551 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 OCA2Q04671 838 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 CTBP1Q13363 440 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 CUL1Q13616 776 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 ARHGAP19Q14CB8 494 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 RBBP5Q15291 538 aaKnown RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 RPS6KA1Q15418 735 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 TRIP13Q15645 432 aaPredicted RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 PDCD2Q16342 344 aaPredicted RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 ZXDCQ2QGD7 858 aaPredicted RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 ANKRD20A4Q4UJ75 823 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 GARNL3Q5VVW2 1013 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 AP1ARQ63HQ0 302 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 FAAH2Q6GMR7 532 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 TTC27Q6P3X3 843 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 TTC23LQ6PF05 361 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 ZNF662Q6ZS27 426 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 LANCL3Q6ZV70 420 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 NEK10Q6ZWH5 1172 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 PRSS41Q7RTY9 318 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 PLD3Q8IV08 490 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 DENND6AQ8IWF6 608 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 KBTBD2Q8IY47 623 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 SIRT6Q8N6T7 355 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 CSNK1A1LQ8N752 337 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 FBXO15Q8NCQ5 510 aaPredicted RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 OR1N1Q8NGS0 311 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 SKA2Q8WVK7 121 aaPredicted RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 ASB11Q8WXH4 323 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 SMPDL3AQ92484 453 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 NR4A3Q92570 626 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 RELTQ969Z4 430 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 MVB12AQ96EY5 273 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 CCDC138Q96M89 665 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 TCF12Q99081 682 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 NPAS2Q99743 824 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 SH3GL3Q99963 347 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 ZNF700Q9H0M5 742 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 EPS8L2Q9H6S3 715 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 MRPS30Q9NP92 439 aaKnown RBP6.37□□□□□ -1.39
VPS53-213ENST00000572334 BFARQ9NZS9 450 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms