RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 COLEC12Q5KU26 742 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 SBSNQ6UWP8 590 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 CAPN12Q6ZSI9 719 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 SHISA6Q6ZSJ9 500 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 C17orf64Q86WR6 236 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 GALNT16Q8N428 558 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 NKAPQ8N5F7 415 aaKnown RBP19.31■□□□□ 0.68
CLK3-225ENST00000569063 ATL1Q8WXF7 558 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 HAUS8Q9BT25 410 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 POPDC3Q9HBV1 291 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 ATP13A2Q9NQ11 1180 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 C5AR2Q9P296 337 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 IKZF3Q9UKT9 509 aa19.31■□□□□ 0.68
CLK3-225ENST00000569063 TENM4Q6N022 2769 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 ANKRD12Q6UB98 2062 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 P2RX6O15547 441 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 FOXS1O43638 330 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 KLHL41O60662 606 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 GSTA2P09210 222 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 FOXK1P85037 733 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 KLC1Q07866 573 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 AIMP2Q13155 320 aaKnown RBP19.3■□□□□ 0.68
CLK3-225ENST00000569063 MYBPC3Q14896 1274 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 PPP1R3AQ16821 1122 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 VWA5B1Q5TIE3 1220 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 KIRREL2Q6UWL6 708 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 C3orf62Q6ZUJ4 267 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 VN1R4Q7Z5H5 301 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 CEP97Q8IW35 865 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 AMER3Q8N944 861 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 ABHD11Q8NFV4 315 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 CDKL2Q92772 493 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 ALKBH8Q96BT7 664 aaKnown RBP19.3■□□□□ 0.68
CLK3-225ENST00000569063 MIEF2Q96C03 454 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 VPS39Q96JC1 886 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 DRC3Q9H069 523 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 FBXL4Q9UKA2 621 aa19.3■□□□□ 0.68
CLK3-225ENST00000569063 TNRC6AQ8NDV7 1962 aaKnown RBP19.3■□□□□ 0.68
CLK3-225ENST00000569063 TCRBV9S1A1TA0A576 114 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 CXorf49A8MYA2 514 aaPredicted RBP19.29■□□□□ 0.68
CLK3-225ENST00000569063 DPM1O60762 260 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 PIAS1O75925 651 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 ZIC2O95409 532 aaPredicted RBP19.29■□□□□ 0.68
CLK3-225ENST00000569063 CDH1P12830 882 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 PLTPP55058 493 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 POU4F1Q01851 419 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 CKAP4Q07065 602 aaKnown RBP19.29■□□□□ 0.68
CLK3-225ENST00000569063 RAPSNQ13702 412 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 ZNF460Q14592 562 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 NDUFA9Q16795 377 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 NADK2Q4G0N4 442 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 VWA2Q5GFL6 755 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 ZDHHC24Q6UX98 284 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 OR4K1Q8NGD4 311 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 FBXO25Q8TCJ0 367 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 PYCR2Q96C36 320 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 TM4SF19Q96DZ7 209 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 MMABQ96EY8 250 aaPredicted RBP19.29■□□□□ 0.68
CLK3-225ENST00000569063 VPS50Q96JG6 964 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 OR4K3Q96R72 315 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 CRB3Q9BUF7 120 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 FAM129AQ9BZQ8 928 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 TGIF2Q9GZN2 237 aa19.29■□□□□ 0.68
CLK3-225ENST00000569063 MDC1Q14676 2089 aaKnown RBP19.29■□□□□ 0.68
CLK3-225ENST00000569063 A0A0A6YYC8 382 aaPredicted RBP19.28■□□□□ 0.68
CLK3-225ENST00000569063 FAM159BA6NKW6 160 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 I3L1I5 382 aaPredicted RBP19.28■□□□□ 0.68
CLK3-225ENST00000569063 MASP2O00187 686 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 CDC7O00311 574 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 GUCA1CO95843 209 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 ANXA5P08758 320 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 GRK3P35626 688 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 GPX6P59796 221 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 CDKL1Q00532 357 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 TRADDQ15628 312 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 RBBP7Q16576 425 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 OR11G2Q8NGC1 345 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 ANKRD49Q8WVL7 239 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 CPNE1Q99829 537 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 SARGQ9BW04 601 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 ZNF552Q9H707 407 aaPredicted RBP19.28■□□□□ 0.68
CLK3-225ENST00000569063 GPAMQ9HCL2 828 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 MKKSQ9NPJ1 570 aaPredicted RBP19.28■□□□□ 0.68
CLK3-225ENST00000569063 C14orf105Q9NVL8 296 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 TRPC4Q9UBN4 977 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 C3orf18Q9UK00 162 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 MTO1Q9Y2Z2 717 aaKnown RBP19.28■□□□□ 0.68
CLK3-225ENST00000569063 MAP4K5Q9Y4K4 846 aa19.28■□□□□ 0.68
CLK3-225ENST00000569063 FEZF1A0PJY2 475 aa19.27■□□□□ 0.68
CLK3-225ENST00000569063 H0YIG0 161 aa19.27■□□□□ 0.68
CLK3-225ENST00000569063 LCMT2O60294 686 aaKnown RBP19.27■□□□□ 0.68
CLK3-225ENST00000569063 WISP3O95389 354 aaPredicted RBP19.27■□□□□ 0.68
CLK3-225ENST00000569063 C1QAP02745 245 aa19.27■□□□□ 0.68
CLK3-225ENST00000569063 ALPPP05187 535 aa19.27■□□□□ 0.68
CLK3-225ENST00000569063 BCL6P41182 706 aa19.27■□□□□ 0.68
CLK3-225ENST00000569063 CCR8P51685 355 aa19.27■□□□□ 0.68
CLK3-225ENST00000569063 SLC12A2P55011 1212 aa19.27■□□□□ 0.68
CLK3-225ENST00000569063 IGFBP7Q16270 282 aa19.27■□□□□ 0.68
CLK3-225ENST00000569063 TUBB8Q3ZCM7 444 aa19.27■□□□□ 0.68
CLK3-225ENST00000569063 ATG9BQ674R7 924 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms