RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 INSIG1O15503 277 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 CDH16O75309 829 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 NDUFS6O75380 124 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 NOL4O94818 638 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 IL18RAPO95256 599 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ATP6V1G2O95670 118 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SYF2O95926 243 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 TGFAP01135 160 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 HBQ1P09105 142 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 STAG3L2P0CL84 134 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 MYL6BP14649 208 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 BRAFP15056 766 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 TSHRP16473 764 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 TCP1P17987 556 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 CCNOP22674 350 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 CTGFP29279 349 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 PTPN6P29350 595 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 TACR3P29371 465 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 CCND2P30279 289 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 HOXA7P31268 230 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 CDH5P33151 784 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 SERPINB5P36952 375 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SLC1A3P43003 542 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SYKP43405 635 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 EIF2B2P49770 351 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 RIDAP52758 137 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 PRMT2P55345 433 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 CLDN8P56748 225 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 DCDC1P59894 354 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ATP6V0D1P61421 351 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 CHRNDQ07001 517 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SCGB2A2Q13296 93 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ITGA9Q13797 1035 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 PIGHQ14442 188 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 TBCEQ15813 527 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 ETFDHQ16134 617 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SRSF7Q16629 238 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS35-205ENST00000563984 TMEM44Q2T9K0 475 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ZSCAN23Q3MJ62 389 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 LBHQ53QV2 105 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 PRAMEF17Q5VTA0 474 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 C18orf63Q68DL7 685 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SLC9A4Q6AI14 798 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 CDC73Q6P1J9 531 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 TTC27Q6P3X3 843 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 RFWD3Q6PCD5 774 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 CYP20A1Q6UW02 462 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SUSD1Q6UWL2 747 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 NAPRTQ6XQN6 538 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SCARA5Q6ZMJ2 495 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 PAGE2Q7Z2X7 111 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 HDDC2Q7Z4H3 204 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SETD3Q86TU7 594 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 FAM228AQ86W67 206 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 HORMAD1Q86X24 394 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 MISPQ8IVT2 679 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 GID4Q8IVV7 300 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ARID3BQ8IVW6 561 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 PDIK1LQ8N165 341 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 UBE2J2Q8N2K1 259 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 GPR137CQ8N3F9 429 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 TERB1Q8NA31 727 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 GLIS1Q8NBF1 620 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ZNF248Q8NDW4 579 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 C19orf18Q8NEA5 215 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 VANGL1Q8TAA9 524 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 LRRC20Q8TCA0 184 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 TCP10LQ8TDR4 215 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 SLAMF9Q96A28 289 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 MRPL38Q96DV4 380 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 DAZAP1Q96EP5 407 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 APOPT1Q96IL0 206 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ZNF479Q96JC4 524 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ZNF570Q96NI8 536 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ZNF317Q96PQ6 595 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 BPIFA3Q9BQP9 254 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 TMEM175Q9BSA9 504 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 C17orf80Q9BSJ5 609 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 THAP7Q9BT49 309 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 SPATA16Q9BXB7 569 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 POTEKPQ9BYX7 375 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 PKIBQ9C010 78 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ZYG11BQ9C0D3 744 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 CLPBQ9H078 707 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 TMEM117Q9H0C3 514 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 OPN3Q9H1Y3 402 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 OR52A5Q9H2C5 316 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 MMP27Q9H306 513 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 VCX2Q9H322 139 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 RMND5AQ9H871 391 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 MINDY3Q9H8M7 445 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 POLR1BQ9H9Y6 1135 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 GBA2Q9HCG7 927 aaPredicted RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 ETNK2Q9NVF9 386 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 ERVK-18Q9QC07 812 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 PEF1Q9UBV8 284 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 NOCTQ9UK39 431 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 MRPS7Q9Y2R9 242 aaKnown RBP4.93□□□□□ -1.62
VPS35-205ENST00000563984 PCDHA10Q9Y5I2 948 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 PSAT1Q9Y617 370 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms