RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ATL1Q8WXF7 558 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 THAP11Q96EK4 314 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 DRC3Q9H069 523 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 ATG10Q9H0Y0 220 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 PLAC1Q9HBJ0 212 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 MKKSQ9NPJ1 570 aaPredicted RBP16.03■□□□□ 0.16
CLK3-210ENST00000563112 C14orf105Q9NVL8 296 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 ARL15Q9NXU5 204 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 MAP10Q9P2G4 905 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 SNX24Q9Y343 169 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 MAP4K5Q9Y4K4 846 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 NUP210LQ5VU65 1888 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 IGLV3-12A0A075B6K2 115 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 KCNE1BA0A087WTH5 132 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 MASP2O00187 686 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 MAP2K7O14733 419 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 ACPPP15309 386 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 FDXRP22570 491 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 CXCR2P25025 360 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 EMP2P54851 167 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 AP1S2P56377 157 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 CALCOCO2Q13137 446 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 FAM53BQ14153 422 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 AGAP7PQ5VUJ5 663 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 LCTLQ6UWM7 567 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 MBOAT1Q6ZNC8 495 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 MAATS1Q7Z4T9 603 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 PARP9Q8IXQ6 854 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 OR11G2Q8NGC1 345 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 AGAP4Q96P64 663 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 HAUS8Q9BT25 410 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 FAM129AQ9BZQ8 928 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 NSMCE4AQ9NXX6 385 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 LUZP4Q9P127 313 aa16.02■□□□□ 0.16
CLK3-210ENST00000563112 A0A0A6YYC8 382 aaPredicted RBP16.01■□□□□ 0.15
CLK3-210ENST00000563112 FAM187AA6NFU0 413 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 I3L1I5 382 aaPredicted RBP16.01■□□□□ 0.15
CLK3-210ENST00000563112 TSPAN12O95859 305 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 HPP00738 406 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 HEXBP07686 556 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 ENO2P09104 434 aaPredicted RBP16.01■□□□□ 0.15
CLK3-210ENST00000563112 SAT1P21673 171 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 SLC26A3P40879 764 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 RPL21P46778 160 aaKnown RBP16.01■□□□□ 0.15
CLK3-210ENST00000563112 CSNK1G2P78368 415 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 ILF2Q12905 390 aaKnown RBP16.01■□□□□ 0.15
CLK3-210ENST00000563112 PHKG1Q16816 387 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 DUPD1Q68J44 220 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 STRA8Q7Z7C7 330 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 ZBED8Q8IZ13 594 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 IQCKQ8N0W5 287 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 Q8NA96 180 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 CAMKVQ8NCB2 501 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 SGPP1Q9BX95 441 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 SLC29A3Q9BZD2 475 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 LHPPQ9H008 270 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 ILKAPQ9H0C8 392 aaPredicted RBP16.01■□□□□ 0.15
CLK3-210ENST00000563112 SYNPO2LQ9H987 977 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 B3GNT3Q9Y2A9 372 aa16.01■□□□□ 0.15
CLK3-210ENST00000563112 CNTRLQ7Z7A1 2325 aa16■□□□□ 0.15
CLK3-210ENST00000563112 IDSB3KWA1 339 aa16■□□□□ 0.15
CLK3-210ENST00000563112 E7ESA3 106 aa16■□□□□ 0.15
CLK3-210ENST00000563112 PCDH17O14917 1159 aa16■□□□□ 0.15
CLK3-210ENST00000563112 P2RX6O15547 441 aa16■□□□□ 0.15
CLK3-210ENST00000563112 FOXS1O43638 330 aa16■□□□□ 0.15
CLK3-210ENST00000563112 ALOX12BO75342 701 aa16■□□□□ 0.15
CLK3-210ENST00000563112 CASQ1P31415 396 aa16■□□□□ 0.15
CLK3-210ENST00000563112 PLEKHN1Q494U1 663 aaPredicted RBP16■□□□□ 0.15
CLK3-210ENST00000563112 SLC26A11Q86WA9 606 aa16■□□□□ 0.15
CLK3-210ENST00000563112 FAM26EQ8N5C1 309 aa16■□□□□ 0.15
CLK3-210ENST00000563112 NKAPQ8N5F7 415 aaKnown RBP16■□□□□ 0.15
CLK3-210ENST00000563112 TBC1D19Q8N5T2 526 aa16■□□□□ 0.15
CLK3-210ENST00000563112 PYROXD1Q8WU10 500 aa16■□□□□ 0.15
CLK3-210ENST00000563112 PDLIM5Q96HC4 596 aaKnown RBP16■□□□□ 0.15
CLK3-210ENST00000563112 THOC3Q96J01 351 aaKnown RBP16■□□□□ 0.15
CLK3-210ENST00000563112 VPS39Q96JC1 886 aa16■□□□□ 0.15
CLK3-210ENST00000563112 OLFM1Q99784 485 aa16■□□□□ 0.15
CLK3-210ENST00000563112 WDR83Q9BRX9 315 aaKnown RBP16■□□□□ 0.15
CLK3-210ENST00000563112 TGIF2Q9GZN2 237 aa16■□□□□ 0.15
CLK3-210ENST00000563112 MOCS1Q9NZB8 636 aa16■□□□□ 0.15
CLK3-210ENST00000563112 DOCK10Q96BY6 2186 aa16■□□□□ 0.15
CLK3-210ENST00000563112 DOPEY2Q9Y3R5 2298 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 NSG1A0A0A6YYJ2 146 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 FAM95CA0A1B0GW59 222 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 H0YIG0 161 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 FFAR3O14843 346 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 GPR42O15529 346 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 CDH1P12830 882 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 NPPBP16860 134 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 CCR8P51685 355 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 ATG9BQ674R7 924 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 NDUFAF7Q7L592 441 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 VN1R4Q7Z5H5 301 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 ASPGQ86U10 573 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 LAPTM4BQ86VI4 370 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 ZC3HC1Q86WB0 502 aaKnown RBP15.99■□□□□ 0.15
CLK3-210ENST00000563112 AMER3Q8N944 861 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 SPATA4Q8NEY3 305 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 OR56A3Q8NH54 315 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 SLC13A3Q8WWT9 602 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms