RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 MTHFD1P11586 935 aaKnown RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 PCNAP12004 261 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 CDH1P12830 882 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 COX7A2P14406 83 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 NPPBP16860 134 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 XRCC1P18887 633 aaPredicted RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 CA5AP35218 305 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 BDKRB1P46663 353 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 CCT8P50990 548 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ARHGDIAP52565 204 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 STXBP1P61764 594 aaKnown RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 MRPS22P82650 360 aaKnown RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 REEP5Q00765 189 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 SEMG2Q02383 582 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 LIPEQ05469 1076 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 CHRNB3Q05901 458 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 CYP4F3Q08477 520 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 CCINQ13939 588 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 VEZF1Q14119 521 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 SIM2Q14190 667 aaPredicted RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 GNA13Q14344 377 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 SLBPQ14493 270 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS39-204ENST00000561818 NFE2L1Q14494 772 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 KIR2DS3Q14952 304 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 KIR2DS5Q14953 304 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ADRM1Q16186 407 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 RFX4Q33E94 735 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 GRAMD1BQ3KR37 738 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 PLA2G4EQ3MJ16 856 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 PYCR3Q53H96 274 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 MANEAQ5SRI9 462 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 CPTPQ5TA50 214 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 NANOGP8Q6NSW7 305 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 TRIM40Q6P9F5 258 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 KLHL35Q6PF15 583 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 IZUMO2Q6UXV1 221 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ERMP1Q7Z2K6 904 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 NUDT13Q86X67 352 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 METTL4Q8N3J2 472 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 METTL25Q8N6Q8 603 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ANKFN1Q8N957 763 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 HUS1BQ8NHY5 278 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ZFP28Q8NHY6 868 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 CHTF18Q8WVB6 975 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 PYDC1Q8WXC3 89 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 GTF2H4Q92759 462 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 NEIL2Q969S2 332 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ESAMQ96AP7 390 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 MOCOSQ96EN8 888 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 C11orf24Q96F05 449 aaPredicted RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 CENPNQ96H22 339 aaPredicted RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 MRGPRX1Q96LB2 322 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 C12orf66Q96MD2 445 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 THUMPD3Q9BV44 507 aaKnown RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 OSBPL11Q9BXB4 747 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 GSDMCQ9BYG8 508 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ASPSCR1Q9BZE9 553 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 MTG2Q9H4K7 406 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 REEP4Q9H6H4 257 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 NANOGQ9H9S0 305 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 CD320Q9NPF0 282 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 MIEF1Q9NQG6 463 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ACSS2Q9NR19 701 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 TMEM184CQ9NVA4 438 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 PDP2Q9P2J9 529 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ATP6V1HQ9UI12 483 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 TSR3Q9UJK0 312 aaKnown RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 VPS4AQ9UN37 437 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 SNX7Q9UNH6 387 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 COQ6Q9Y2Z9 468 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 TCF20Q9UGU0 1960 aaKnown RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 TRANK1O15050 2925 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 SYNDIG1LA6NDD5 238 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 TMEM247A6NEH6 219 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 TMEM202A6NGA9 273 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PRR19A6NJB7 356 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PDZK1P1A8MUH7 402 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 MAGEB17A8MXT2 336 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 K7ESM1 405 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 NME4O00746 187 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 ARPC2O15144 300 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 CAPN5O15484 640 aaPredicted RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 MBTPS2O43462 519 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 AKAP10O43572 662 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 SLITRK5O94991 958 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 RASGRP1O95267 797 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 BMP10O95393 424 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 SEMA4FO95754 770 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PAK4O96013 591 aaPredicted RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 LDLRP01130 860 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 EGFP01133 1207 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 TNFP01375 233 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 CEACAM5P06731 702 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 IFI6P09912 130 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 DRD2P14416 443 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 UQCRBP14927 111 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PDHA2P29803 388 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PKLRP30613 574 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 IGFALSP35858 605 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 LTBRP36941 435 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms