RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 OR9A4Q8NGU2 314 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 CCDC138Q96M89 665 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 EBNA1BP2Q99848 306 aaKnown RBP9.71□□□□□ -0.86
LDLR-214ENST00000560628 DRC3Q9H069 523 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 ATG10Q9H0Y0 220 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 EPS8L2Q9H6S3 715 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 PPANQ9NQ55 473 aaKnown RBP9.71□□□□□ -0.86
LDLR-214ENST00000560628 TMEM184CQ9NVA4 438 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 TAS2R13Q9NYV9 303 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 PLA2G3Q9NZ20 509 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 PTGFRNQ9P2B2 879 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 SLC17A6Q9P2U8 582 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 PLEKHB1Q9UF11 243 aaPredicted RBP9.71□□□□□ -0.86
LDLR-214ENST00000560628 NOVA2Q9UNW9 492 aaKnown RBP9.71□□□□□ -0.86
LDLR-214ENST00000560628 SH2B3Q9UQQ2 575 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 PDE10AQ9Y233 779 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 CNTRLQ7Z7A1 2325 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 DOCK10Q96BY6 2186 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 ICE1Q9Y2F5 2266 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 FEZF1A0PJY2 475 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 TXNDC9O14530 226 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 PRPF4O43172 522 aaKnown RBP eCLIP9.7□□□□□ -0.86
LDLR-214ENST00000560628 JRKO75564 520 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 F10P00742 488 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 CELA2AP08217 269 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 COX6A1P12074 109 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 RGS4P49798 205 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 TBPL1P62380 186 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 CSNK1G2P78368 415 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 RELAQ04206 551 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 CDC16Q13042 620 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 ELOAQ14241 798 aaKnown RBP9.7□□□□□ -0.86
LDLR-214ENST00000560628 ZNF169Q14929 603 aaPredicted RBP9.7□□□□□ -0.86
LDLR-214ENST00000560628 NDUFA9Q16795 377 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 SPANXN3Q5MJ09 141 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 AGTRAPQ6RW13 159 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 PRSS41Q7RTY9 318 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 PCGF5Q86SE9 256 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 ZC3H7AQ8IWR0 971 aaKnown RBP9.7□□□□□ -0.86
LDLR-214ENST00000560628 KLHL7Q8IXQ5 586 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 PALM2Q8IXS6 379 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 SIRT6Q8N6T7 355 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 OR1N1Q8NGS0 311 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 BRIX1Q8TDN6 353 aaKnown RBP9.7□□□□□ -0.86
LDLR-214ENST00000560628 GRHL3Q8TE85 626 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 PPP4R1Q8TF05 950 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 PSMF1Q92530 271 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 MVB12AQ96EY5 273 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 LINGO1Q96FE5 620 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 CFAP36Q96G28 342 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 CAPZA3Q96KX2 299 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 LMF1Q96S06 567 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 KCNF1Q9H3M0 494 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 GRPEL1Q9HAV7 217 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 PARVBQ9HBI1 364 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 MKKSQ9NPJ1 570 aaPredicted RBP9.7□□□□□ -0.86
LDLR-214ENST00000560628 CCDC177Q9NQR7 707 aaPredicted RBP9.7□□□□□ -0.86
LDLR-214ENST00000560628 ERRFI1Q9UJM3 462 aaPredicted RBP9.7□□□□□ -0.86
LDLR-214ENST00000560628 MKL2Q9ULH7 1088 aa9.7□□□□□ -0.86
LDLR-214ENST00000560628 IGHV1-45A0A0A0MS14 117 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 OR2W5A6NFC9 320 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 USP27XA6NNY8 438 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 EIF3FO00303 357 aaPredicted RBP9.69□□□□□ -0.86
LDLR-214ENST00000560628 CES2O00748 559 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 LCMT2O60294 686 aaKnown RBP9.69□□□□□ -0.86
LDLR-214ENST00000560628 WFS1O76024 890 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 BMP10O95393 424 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 TTC4O95801 387 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 C8GP07360 202 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 PRR35P0CG20 571 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 HRH2P25021 359 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 IVDP26440 423 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 ELK3P41970 407 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 AVPR1BP47901 424 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 EFNA3P52797 238 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 ARG2P78540 354 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 MFAP5Q13361 173 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 FAM53BQ14153 422 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 TLR1Q15399 786 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 PHKG1Q16816 387 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 LRRK2Q5S007 2527 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 TEDDM1Q5T9Z0 273 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 MFSD4BQ5TF39 518 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 B3GNTL1Q67FW5 361 aaPredicted RBP9.69□□□□□ -0.86
LDLR-214ENST00000560628 TRMT10BQ6PF06 316 aaKnown RBP9.69□□□□□ -0.86
LDLR-214ENST00000560628 VN1R4Q7Z5H5 301 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 C17orf64Q86WR6 236 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 MYO1HQ8N1T3 1032 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 GPATCH11Q8N954 259 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 GABPB2Q8TAK5 448 aaPredicted RBP9.69□□□□□ -0.86
LDLR-214ENST00000560628 CERS2Q96G23 380 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 BARD1Q99728 777 aaKnown RBP9.69□□□□□ -0.86
LDLR-214ENST00000560628 TGIF2Q9GZN2 237 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 PCBD2Q9H0N5 130 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 PLAC1Q9HBJ0 212 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 AGPAT4Q9NRZ5 378 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 C14orf105Q9NVL8 296 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 HCN3Q9P1Z3 774 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 HEATR5BQ9P2D3 2071 aa9.69□□□□□ -0.86
LDLR-214ENST00000560628 CHMP2BQ9UQN3 213 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms