RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ZNF385CQ66K41 422 aaPredicted RBP12.43□□□□□ -0.42
NEDD8-208ENST00000560427 NXPE4Q6UWF7 544 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 PLD6Q8N2A8 252 aaKnown RBP12.43□□□□□ -0.42
NEDD8-208ENST00000560427 CSNK1A1LQ8N752 337 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 SNRNP27Q8WVK2 155 aaKnown RBP12.43□□□□□ -0.42
NEDD8-208ENST00000560427 SEC16BQ96JE7 1060 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 GBP5Q96PP8 586 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 AIF1LQ9BQI0 150 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 TMEM109Q9BVC6 243 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 GPR87Q9BY21 358 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 SPRTNQ9H040 489 aaPredicted RBP12.43□□□□□ -0.42
NEDD8-208ENST00000560427 GPN2Q9H9Y4 310 aaPredicted RBP12.43□□□□□ -0.42
NEDD8-208ENST00000560427 CUTCQ9NTM9 273 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 TBK1Q9UHD2 729 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 SH2B3Q9UQQ2 575 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 PCDHGA6Q9Y5G7 932 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 SNRNP200O75643 2136 aaKnown RBP12.43□□□□□ -0.42
NEDD8-208ENST00000560427 URB1O60287 2271 aaKnown RBP12.42□□□□□ -0.42
NEDD8-208ENST00000560427 LOC105369274A0A096LPK9 316 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 LOC102723532A0A0G2JNH3 316 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 HYKKA2RU49 373 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 CCDC151A5D8V7 595 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 C9J4A7 227 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 STX16-NPEPL1H3BU86 382 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 K7EPI3 171 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 STX16O14662 325 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 MAP2K7O14733 419 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 TERTO14746 1132 aaKnown RBP12.42□□□□□ -0.42
NEDD8-208ENST00000560427 DSCR3O14972 297 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 SMIM24O75264 130 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 ONECUT2O95948 504 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 RECKO95980 971 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 PIM1P11309 404 aaPredicted RBP12.42□□□□□ -0.42
NEDD8-208ENST00000560427 KRT15P19012 456 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 SLCO1A2P46721 670 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 PCDH1Q08174 1060 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 PCBP2Q15366 365 aaKnown RBP eCLIP12.42□□□□□ -0.42
NEDD8-208ENST00000560427 NDUFA9Q16795 377 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 MUM1Q2TAK8 710 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 CRTC2Q53ET0 693 aaPredicted RBP12.42□□□□□ -0.42
NEDD8-208ENST00000560427 PRAMEF17Q5VTA0 474 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 ATG9BQ674R7 924 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 PRMT9Q6P2P2 845 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 CCDC81Q6ZN84 652 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 TMPRSS11BQ86T26 416 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 OR4N4Q8N0Y3 316 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 ZSCAN1Q8NBB4 408 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 MFSD9Q8NBP5 474 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 SLC38A9Q8NBW4 561 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 CAMKVQ8NCB2 501 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 TTLQ8NG68 377 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 EPS8L3Q8TE67 593 aaKnown RBP12.42□□□□□ -0.42
NEDD8-208ENST00000560427 WDR34Q96EX3 536 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 SLC45A3Q96JT2 553 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 SCYL1Q96KG9 808 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 EFCAB11Q9BUY7 163 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 COPG2Q9UBF2 871 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 OPTCQ9UBM4 332 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 DCDC2Q9UHG0 476 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 LGALS13Q9UHV8 139 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 CROTQ9UKG9 612 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 PCDHGA4Q9Y5G9 962 aa12.42□□□□□ -0.42
NEDD8-208ENST00000560427 LOC101059948A0A1B0GTJ6 334 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 TEX51A0A1B0GUA7 166 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 K7ENP7 123 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 CLGNO14967 610 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 PRPF4O43172 522 aaKnown RBP eCLIP12.41□□□□□ -0.421e-7■□□□□ 8.7
NEDD8-208ENST00000560427 CCNT2O60583 730 aaKnown RBP12.41□□□□□ -0.42
NEDD8-208ENST00000560427 GLRA3O75311 464 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 KATNA1O75449 491 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 RAB40ALP0C0E4 278 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 SLC35G6P0C7Q6 338 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 C1GALT1C1LP0DN25 315 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 PYGBP11216 843 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 LIFP15018 202 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 ITPKBP27987 946 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 AHRP35869 848 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 DLSTP36957 453 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 BCL6P41182 706 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 GDF5P43026 501 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 SCTRP47872 440 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 DCDP81605 110 aaKnown RBP12.41□□□□□ -0.42
NEDD8-208ENST00000560427 NFKB2Q00653 900 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 MC1RQ01726 317 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 VAC14Q08AM6 782 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 DNASE1L3Q13609 305 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 PWP1Q13610 501 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 FAM53BQ14153 422 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 E2F2Q14209 437 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 TBCCQ15814 346 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 PFKFB4Q16877 469 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 C18orf21Q32NC0 220 aaPredicted RBP12.41□□□□□ -0.42
NEDD8-208ENST00000560427 PAGE2BQ5JRK9 111 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 CATSPEREQ5SY80 951 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 NIPAL1Q6NVV3 410 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 INO80CQ6PI98 192 aaPredicted RBP12.41□□□□□ -0.42
NEDD8-208ENST00000560427 SLCO4C1Q6ZQN7 724 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 PKD1L2Q7Z442 2459 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 CROCCP2Q86T23 111 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 ASPGQ86U10 573 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms