RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TBCCD1Q9NVR7 557 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 VPS29Q9UBQ0 182 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.46□□□□□ -0.42
LDLR-207ENST00000558013 CHD9Q3L8U1 2897 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 FADS2P1A8MWK0 482 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 NEDD8-MDP1E9PL57 170 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 ATP6V1G1O75348 118 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 GCM2O75603 506 aaPredicted RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 ITGAMP11215 1152 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 ZNF12P17014 697 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 GPX2P18283 190 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 PRPS1L1P21108 318 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 PBLDP30039 288 aaPredicted RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 BCAP31P51572 246 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 DGKEP52429 567 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 RPP38P78345 283 aaKnown RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 DEFB103AP81534 67 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 IQCCQ4KMZ1 466 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 MPPE1Q53F39 396 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 COX20Q5RI15 118 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 THOC6Q86W42 341 aaKnown RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 TCEAL8Q8IYN2 117 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 NAGSQ8N159 534 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 CHCHD4Q8N4Q1 142 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 CYB5D2Q8WUJ1 264 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 MCCC1Q96RQ3 725 aaPredicted RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 LINC00597Q9H2U6 94 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 TM9SF3Q9HD45 589 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 RLIMQ9NVW2 624 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 KIF17Q9P2E2 1029 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 FZD4Q9ULV1 537 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 SLC6A14Q9UN76 642 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 SZT2Q5T011 3432 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 A0A0C4DFX4 3053 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 PITPNM1O00562 1244 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 TSPAN6O43657 245 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 CBFA2T3O75081 653 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 SLC16A8O95907 504 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 URODP06132 367 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 C8GP07360 202 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 JUPP14923 745 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 ACVR2AP27037 513 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 CSNK1DP48730 415 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 RAE1P78406 368 aaKnown RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 MAD2L1BPQ15013 274 aaPredicted RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 CAPN13Q6MZZ7 669 aaPredicted RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 HTR3DQ70Z44 454 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 SLC39A11Q8N1S5 342 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 WDR20Q8TBZ3 569 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 APH1BQ8WW43 257 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 MRPS31Q92665 395 aaKnown RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 DNASE1L2Q92874 299 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 RIOK2Q9BVS4 552 aaKnown RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 SH3BP4Q9P0V3 963 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 NDRG4Q9ULP0 352 aaKnown RBP12.45□□□□□ -0.42
LDLR-207ENST00000558013 TESMINQ9Y4I5 508 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 VCANP13611 3396 aa12.45□□□□□ -0.42
LDLR-207ENST00000558013 M0R3G1 203 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 TGM5O43548 720 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 FAM20BO75063 409 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ADAM23O75077 832 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 SEMG1P04279 462 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 DNAJA1P31689 397 aaKnown RBP12.44□□□□□ -0.42
LDLR-207ENST00000558013 HPCAL1P37235 193 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 MC1RQ01726 317 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 GSTM4Q03013 218 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ACSM2AQ08AH3 577 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 GGTA1PQ4G0N0 100 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 SOWAHCQ53LP3 525 aaPredicted RBP12.44□□□□□ -0.42
LDLR-207ENST00000558013 ZC3H12BQ5HYM0 836 aaKnown RBP12.44□□□□□ -0.42
LDLR-207ENST00000558013 CATSPEREQ5SY80 951 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ACSM2BQ68CK6 577 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 TMEM215Q68D42 235 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 OTOP2Q7RTS6 562 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 TRIM74Q86UV6 250 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 TRIM73Q86UV7 250 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 PROX1Q92786 737 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 LMLNQ96KR4 655 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ZNF347Q96SE7 839 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 CORO1BQ9BR76 489 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 SH2B3Q9UQQ2 575 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 PABPN1LA6NDY0 278 aaKnown RBP12.44□□□□□ -0.42
LDLR-207ENST00000558013 CLDN25C9JDP6 229 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 M0QX08 132 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 GABARAPO95166 117 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 LATS1O95835 1130 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ALDH1A1P00352 501 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 BMP4P12644 408 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 MAPK8P45983 427 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 NUDT6P53370 316 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 MEF2AQ02078 507 aaPredicted RBP12.44□□□□□ -0.42
LDLR-207ENST00000558013 MAPK11Q15759 364 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 FAM124AQ86V42 546 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 OR2A12Q8NGT7 310 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 C7orf34Q96L11 122 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ALPK1Q96QP1 1244 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 NRTNQ99748 197 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 DUSP26Q9BV47 211 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 EPS8L2Q9H6S3 715 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ACOT13Q9NPJ3 140 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms